DY258031

Overview
NameDY258031
Unique NameDY258031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1285
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANAC (L-threonine 3-dehydrogenase OS=Xanthomonas axonopodis pv. citri GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 51/149 (34.23%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   80 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  ++GQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++ PIPD +P E AA
Sbjct:    3 ALVKREANKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIEPGLTIGHEFVGRVAELGSA-VTGYQIGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWPIPDQIPSELAA 145          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRATN (L-threonine 3-dehydrogenase OS=Francisella tularensis subsp. novicida (strain U112) GN=tdh PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 50/150 (33.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W      +P++ GHE AG +VA GDG +T++ +G  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 IDDAPIPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQNTIPVPMITGHEFAGEVVAKGDG-VTSVDIGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 65/236 (27.54%), Postives = 100/236 (42.37%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCS---QAQCSGYSVDG-------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGL-RVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKDMCD 790
            K  EV ++++Y+ VCHTD +   G  P +   P V GHEGAG + ++GD  +T +K G +V   + A+ C  C+ C  G    C      Q  G   DG                   TF +Y V     V  I    PL+ A  + C   T + A L +                      Q A   G  ++IAID  + K++ C+ +GA  FV+  ED +  +  ++ + +M D
Sbjct:   35 KAHEVRIKIEYTAVCHTDAYTLSGSDP-EGLFPCVLGHEGAGIVESVGDDVIT-VKPGDHVIALYTAE-CGKCKFCTSGKTNLCGAVRATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQKGDTVAVFGCGTVGLSVIQGAKLRGASKIIAIDINNKKKQYCSQFGATDFVNPKEDLAKDQTIVEKLIEMTD 267          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: DHSO_BACHD (Sorbitol dehydrogenase OS=Bacillus halodurans GN=gutB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 2
Query:   80 ACVFKDHNANIDFVKDHPVPQQADLKPG--EVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA---PILCAGVTVYRALLN 565
            A V   H      V++ P P      PG  +V ++V Y+GVC +D+H ++G +P     P+  GHE +G IV +G+G +T   VG  V  +     C  C  C  G    CS  +  G   DG+F +Y ++    +  +P G+    AA   P+ C    + +  +N
Sbjct:    3 ALVKTQHGTGHFAVQEKPEPT-----PGKHQVKIKVKYTGVCGSDIHTYEGHYPVAA--PVTLGHEFSGEIVELGEG-VTGFNVGDRVTSETTYSICGKCSYCTSGDYNLCSHRKGLGNQQDGSFAKYVIARQESLHHLPAGVDDRSAAMTEPLACTHHAIAKTSIN 161          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: DOIAD_STRRY (2-deoxy-scyllo-inosamine dehydrogenase OS=Streptomyces rimosus subsp. paromomycinus GN=parE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.936e-12
Identity = 45/134 (33.58%), Postives = 69/134 (51.49%), Query Frame = 2
Query:  125 DHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPI 526
            +  VP+ A   PGE LV++ Y+ +C +DL  +KG W      P+V GHE +G +V  G G      VGQNV +  L  +C  C +C  G    C+  Q  G++ DG   +Y      ++  +P+GL L +A  +
Sbjct:   16 ERDVPEPA---PGEALVKLAYNSICGSDLSFYKGVWHGFT-YPVVPGHEWSGTVVEAGGGAAD--LVGQNV-VGDLTVACGSCRHCTVGKPTLCADLQELGFTRDGACAEYMTVPTGNLHRLPEGLSLREATQV 142          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.936e-12
Identity = 60/222 (27.03%), Postives = 91/222 (40.99%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV---------------------DGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 754
            K  EV +++  SG+C +D H   G    K   P++ GHE AG + ++G+G +T++K G  V I      C +C +CR      C +++   ++                       GTF +Y V+    V  I    PLE+   I C   T Y A +NS K +PG                    AA   R+I ID   +K       GA + V+  D+  P
Sbjct:   32 KAHEVRIKILASGICRSDDHVLSG--ALKVNFPIILGHEAAGVVESVGEG-VTSMKPGDKV-IPIFLPQCGECNSCRHPRGNVCKKSELGPFTGLLYDGTSRFTYQGKPVYHFVRTGTFTEYTVAPEDSVVKIDASAPLEKVCLIGCGFSTGYGAAINSAKVQPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINKEKFPKAKELGATECVNPLDYKKP 249          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_RHILO (L-threonine 3-dehydrogenase OS=Rhizobium loti GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.835e-12
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:  116 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            ++++ PVP+   + P +VL+++  + +C TD+H +  D W  K   +P+V GHE  G +   G   +T  KVGQ V  +     C  C NCR G    C      G +  G F +Y      +V PIPD +P E AA     G  V+ AL
Sbjct:   18 WMEEVPVPE---IGPNDVLIKIRKTAICGTDVHIYNWDQWAQKTVPVPMVTGHEFVGTVADFG-AAVTEYKVGQRVSGEGHI-VCGHCRNCRAGRGHLCRNTLGVGVNRPGAFGEYLAIPQHNVVPIPDDVPDEIAAIFDPLGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_RHIL3 (L-threonine 3-dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.835e-12
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  116 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            ++++ PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMENVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_RHIEC (L-threonine 3-dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.835e-12
Identity = 52/150 (34.67%), Postives = 75/150 (50.00%), Query Frame = 2
Query:  116 FVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            ++++ PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE +G I  IG   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V PIPD +  E AA     G  V+ AL
Sbjct:   18 WMENVPVPE---VGPNDVLIRVKKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFSGEIAEIG-SAVTRYHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFGEFVCIPESNVVPIPDDISDEIAAIFDPFGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_PYRFU (Probable L-threonine 3-dehydrogenase OS=Pyrococcus furiosus GN=tdh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.835e-12
Identity = 61/214 (28.50%), Postives = 95/214 (44.39%), Query Frame = 2
Query:  158 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKDMCD 790
            PGEVL+++  + +C TDLH ++ +  A+ R+  P + GHE AG +V +G G +  ++VG  V ++     C  C  C+ G    C   +  G   DG F +YAV  A++V   P  +P E A      G  V   L    A  G+                   A+    VI  +  + +R L    GAD  ++ FE     E  +K + D+ D
Sbjct:   29 PGEVLIKILATSICGTDLHIYEWNEWAQTRIRPPQIMGHEVAGEVVEVGPG-VEGIEVGDYVSVETHI-VCGKCYACKRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNVWKNPKNIPPEYATLQEPLGNAVDTVLAGPIA--GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRNLAKKVGADYVINPFE-----EDVVKEVMDITD 233          
The following BLAST results are available for this feature:
BLAST of DY258031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
TDH_XANAC1.722e-1234.23L-threonine 3-dehydrogenase OS=Xanthomonas axonopo... [more]
TDH_FRATN1.722e-1233.33L-threonine 3-dehydrogenase OS=Francisella tularen... [more]
FADH_YEAST1.722e-1227.54S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
DHSO_BACHD1.722e-1229.34Sorbitol dehydrogenase OS=Bacillus halodurans GN=g... [more]
DOIAD_STRRY2.936e-1233.582-deoxy-scyllo-inosamine dehydrogenase OS=Streptom... [more]
ADH1B_UROHA2.936e-1227.03Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
TDH_RHILO3.835e-1233.33L-threonine 3-dehydrogenase OS=Rhizobium loti GN=t... [more]
TDH_RHIL33.835e-1234.67L-threonine 3-dehydrogenase OS=Rhizobium leguminos... [more]
TDH_RHIEC3.835e-1234.67L-threonine 3-dehydrogenase OS=Rhizobium etli (str... [more]
TDH_PYRFU3.835e-1228.50Probable L-threonine 3-dehydrogenase OS=Pyrococcus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258031 ID=DY258031; Name=DY258031; organism=Citrus clementina; type=EST; length=1285bp
GACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGTCAC
AAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGACCAC
AATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGCTGA
CCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTATGCC
ACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGTCTA
CCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGGAGA
CGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAATGGC
TCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAGGCT
ACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTTCCA
ACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACGGAT
TACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTCTAT
CGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCATTGT
GGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCGCCA
TGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAACTT
TGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTCGGA
TCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTAGGAC
CTCACGCTGCTGTAGTTGCGGCAGCTGGTGCCGCCGCTTACGAGCAGGCT
CTCGAGTAATTCGTCCAACCGGTACTCTCGTTGCCGTCGGGTCTCCCCCC
AACACTTCCATAAAGGCCAACGTCTTCTTCCCCGTCTTCTACTCCAAGCG
CAAATCGGGGCCTAACTTGGGAACAGGCAAGATGCCCGTGGAAGCTCCCA
ATTTCCCTGCCCCGGAAAAGGTACCCCCCCCAAATCGAGTTTTGCCCCCT
TGGAAAATTTTTCCCGAAATTTTAAAAACCCCAGGGGAAAAAGGGGCAAA
ATCCCCCGGGGAGAATTTTTTTCCCAAAAAATTTTAAAACCCTTCTCCCC
CCCCCTCCCCCCCCTCCCCCCCCCCTCTTCCCCCCTTTTTTGGGGTTTTT
AACCTTTTTCCCCCCCGGGGGCCCCCCCCTTTCCCGGGGGGCTCGGGGGG
GGGGGCCCCCCCGAGGAAAAAGGAGGGGGGAGAAA
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