DY258031

Overview
NameDY258031
Unique NameDY258031
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1285
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_MESSB (L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (strain BNC1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.009e-12
Identity = 50/145 (34.48%), Postives = 70/145 (48.28%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            P+P+   + P +VL++V  + +C TD+H W  D W  K   +PLV GHE  G +V +G   +T  ++GQ V  +     C  C NCR G    C      G    G F +Y      +V  IPD +P E AA     G  V+ AL
Sbjct:   23 PLPE---IGPNDVLIKVRKAAICGTDVHIWNWDEWARKTVPVPLVTGHEFVGEVVDVGSA-VTEYRIGQRVSGEGHI-VCGHCRNCRAGRGHLCRNTLGVGVHRPGAFAEYISLPQHNVVAIPDDVPDEIAAIFDPLGNAVHTAL 162          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_FRAP2 (L-threonine 3-dehydrogenase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.009e-12
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 2
Query:  119 VKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WP-AKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNV-GIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            + D P+P+       +VL+++  + +C TDLH +  D W  A   +P++ GHE AG +VA G+G +T++ VG  V G   L   C  C NCR G    C +    G +V G F +Y V  A +V  IPD +  + A+     G  ++ AL
Sbjct:   16 IDDAPMPEYGY---NDVLIKIKKTAICGTDLHIYNWDKWSQATIPVPMITGHEFAGEVVAKGNG-VTSVDVGDRVSGEGHLV--CGQCRNCRAGKRHLCRKTIGIGVNVQGAFAEYLVMPAVNVFKIPDSISDDIASTFDPMGNAIHTAL 159          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_THEON (Probable L-threonine 3-dehydrogenase OS=Thermococcus onnurineus (strain NA1) GN=tdh PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12
Identity = 61/211 (28.91%), Postives = 94/211 (44.55%), Query Frame = 2
Query:  158 PGEVLVRVDYSGVCHTDLHAWKGDWPAKPRL--PLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVD-FEDHSDPEKFIKAIKD 781
            PGEVL++V  + +C TDLH ++ +  A+ R+  P + GHE AG ++ +G G  T + VG  +  +     C  C  C+      C   +  G  +DG F +YA+  A++    P  +P E A      G  V   L    A  G+                   A+    VI  +  + +R+L    GAD  V+ FE+  DP KF+  I D
Sbjct:   29 PGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVIEVGPGVDT-INVGDYISAETHI-VCGKCYACKHNRYHVCQNTKIFGVDMDGVFAEYAIVPAQNAWKNPKDMPPEYATLQEPLGNAVDTVLAGPIA--GRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRELAKKVGADYVVNPFEE--DPVKFVMDITD 233          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12
Identity = 63/233 (27.04%), Postives = 97/233 (41.63%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQ---------------CSG-----YSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIKDMCD 790
            K  EV +++  +GVC TD+        +K   P++ GHEG G + ++G+G +++++ G  V I      C +C+ C       C++ +               C G     Y   G+F +Y V     V  I +G PLE+   I C   T Y A +NS K  PG                    AA   R+IA+D   D+     + GA   VD  D   P +  + + DM D
Sbjct:   33 KAKEVRIKMVATGVCGTDIKHLDTQELSK-FCPMIMGHEGVGIVESVGEG-VSSVRTGDKV-ILLCIPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGAAINSAKVTPGSTCAVFGLGGVGLSVIIGCKAAGAARIIAVDINKDRFAKAKTVGATDCVDPRDFEKPIE--EVLSDMID 260          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.542e-12
Identity = 55/223 (24.66%), Postives = 97/223 (43.50%), Query Frame = 2
Query:  161 GEVLVRVDYSGVCHTDLHAW--KGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQC------------SGYSVDG----------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLN-SKARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 754
            GEV +++ ++ +CHTD++ W  KG  P  PR   + GHE  G + ++G+G +T+LK G +  +      C +C +C+      C   +             S +S+ G          TF +Y V +A  V  I    PL++   + C   T   A +N +K +PG                     +   R+I +D    + +L   +G ++FV+ ++H  P
Sbjct:   36 GEVRLKILFTSLCHTDVYFWEAKGQTPLFPR---IFGHEAGGIVESVGEG-VTHLKPGDH-ALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKEHDKP 253          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADHX_OCTVU (Alcohol dehydrogenase class-3 OS=Octopus vulgaris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.544e-12
Identity = 62/230 (26.96%), Postives = 99/230 (43.04%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQ---AQCSGYSVDG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNSKA-RPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDPEKFIKAIK 778
            K GEV +++ +SGVCHTD +  +G  P +   P++ GHEGAG + +IG+G +T++K G  V I      C +C+ C       C +    Q  G   DG                  TF ++ V     +  +     L++   + C   T Y A LN+ A   G                    AA   R+I ID  + K ++   +G  +FV      +P+KF K+++
Sbjct:   33 KSGEVRIKILHSGVCHTDAYTLEGIDP-EGIFPVILGHEGAGIVESIGEG-VTSVKPGDTV-IPLYVPQCYECKFCLNPKTNLCQKIRVTQGKGVMPDGTTRFTCKGKEVFHFMGCSTFSEFTVVAEISIAKVNPKAALDKVCLLGCGISTGYGAALNTAAVEKGSNCAVWGLGAVGLAVAMGCKAAGAARIIGIDINESKFEIGKKFGITEFV------NPKKFCKSVQ 253          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.544e-12
Identity = 61/221 (27.60%), Postives = 91/221 (41.18%), Query Frame = 2
Query:  155 KPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSV--DG------------------TFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRALLNS-KARPGQYXXXXXXXXXXXXXXXQYAAAMGLRVIAIDTGDDKRKLCASYGADKFVDFEDHSDP 754
            K  EV +++  +G+C TD H  KG   +K   P++ GHE  G + +IG+G +T +K G  V I      C +C  CR      C ++  +G  V  DG                  TF +Y V     V  I D  P E+   I C   T Y A + + K +PG                    +A   R+I ID   DK +   + GA + +  +D + P
Sbjct:   33 KTKEVRIKILATGICRTDDHVIKGTMVSK--FPVIVGHEATGIVESIGEG-VTTVKPGDKV-IPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKP 249          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: Y053_HAEIN (Uncharacterized zinc-type alcohol dehydrogenase-like protein HI0053 OS=Haemophilus influenzae GN=HI0053 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.457e-11
Identity = 50/167 (29.94%), Postives = 80/167 (47.90%), Query Frame = 2
Query:   77 AACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGDWPAKPRLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQ---AAPILCAGVTVYRALLNS 568
            A C+ K +N     VK+ P P+++D    +VL++V+  G+C +D+ A++G  P     P + GHE  G ++  G G    ++VG  V +      C  C  C  G    C   +  G  +DG  Q+     A  +T +PD LP+ Q   A P+  A   ++R  L S
Sbjct:    7 AICLEKPNNV---VVKEVPYPEKSD---NDVLIQVESMGICGSDIGAYRGTNPLVT-YPRILGHEIVGRVIESGIGMSDGVRVGDRVIVDPYV-CCGQCYPCSIGRTNCCESLKVIGVHIDGGMQEVIRHPAHLLTKVPDNLPIHQLPLAEPLTIALHALHRTTLKS 165          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_XANC5 (L-threonine 3-dehydrogenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.457e-11
Identity = 51/149 (34.23%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   80 ACVFKDHNANIDFVKDHPVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKPRLP-LVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAA 520
            A V ++ N  I +++  PVP      P EVL++++ + +C TDLH +  D W  +   P L  GHE  G +  +G   +T  +VGQ V  +     C  C NCR G    C      G +V+G F +Y V  A ++  IPD +P E AA
Sbjct:    3 ALVKREANKGI-WLEQVPVPTPG---PNEVLIKLEKTAICGTDLHIYLWDEWSQRTIRPGLTIGHEFVGRVAELGSA-VTGYQVGQRVSAEGHI-VCGHCRNCRGGRPHLCPNTVGIGVNVNGAFAEYMVMPASNLWLIPDQIPSELAA 145          
BLAST of DY258031 vs. ExPASy Swiss-Prot
Match: TDH_SINMW (L-threonine 3-dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=tdh PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.457e-11
Identity = 52/145 (35.86%), Postives = 71/145 (48.97%), Query Frame = 2
Query:  131 PVPQQADLKPGEVLVRVDYSGVCHTDLHAWKGD-WPAKP-RLPLVGGHEGAGPIVAIGDGTLTNLKVGQNVGIKWLADSCLDCENCREGIEATCSQAQCSGYSVDGTFQQYAVSYARHVTPIPDGLPLEQAAPILCAGVTVYRAL 559
            PVP+   + P +VL+RV  S +C TD+H W  D W  K   +P+V GHE  G IV +G   +T   VG+ V  +     C  C NCR G    C      G +  G+F ++      +V  IPD +P E AA     G  V+ AL
Sbjct:   23 PVPE---VGPNDVLIRVRKSAICGTDVHIWNWDQWAQKTIPVPMVVGHEFMGEIVEVGP-AVTKHHVGERVSGEGHI-VCGKCRNCRAGRGHLCRNTLGVGVNRPGSFAEFVCLPEYNVVSIPDDVPDEIAAIFDPFGNAVHTAL 162          
The following BLAST results are available for this feature:
BLAST of DY258031 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
TDH_MESSB5.009e-1234.48L-threonine 3-dehydrogenase OS=Mesorhizobium sp. (... [more]
TDH_FRAP25.009e-1234.00L-threonine 3-dehydrogenase OS=Francisella philomi... [more]
TDH_THEON6.542e-1228.91Probable L-threonine 3-dehydrogenase OS=Thermococc... [more]
ADH6_RAT6.542e-1227.04Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH1_PEA6.542e-1224.66Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADHX_OCTVU8.544e-1226.96Alcohol dehydrogenase class-3 OS=Octopus vulgaris ... [more]
ADH7_HUMAN8.544e-1227.60Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
Y053_HAEIN1.457e-1129.94Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
TDH_XANC51.457e-1134.23L-threonine 3-dehydrogenase OS=Xanthomonas campest... [more]
TDH_SINMW1.457e-1135.86L-threonine 3-dehydrogenase OS=Sinorhizobium medic... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH02ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258031 ID=DY258031; Name=DY258031; organism=Citrus clementina; type=EST; length=1285bp
GACTCTCTCTTTCTCTCTTCACAACTCTACAGCAATCAAAACTATGTCAC
AAACCCTCGATTACCCCAAGACCGGCGCAGCCTGCGTCTTCAAAGACCAC
AATGCCAACATTGATTTCGTCAAGGATCACCCAGTCCCCCAACAGGCTGA
CCTCAAGCCTGGAGAGGTCCTCGTTCGTGTCGACTACTCTGGTGTATGCC
ACACCGATCTTCACGCTTGGAAAGGTGACTGGCCGGCGAAGCCTCGTCTA
CCCCTCGTAGGTGGTCATGAGGGTGCAGGTCCAATCGTGGCCATCGGAGA
CGGTACATTGACTAACCTCAAAGTTGGTCAAAACGTCGGAATCAAATGGC
TCGCCGACTCGTGTCTCGACTGCGAGAACTGTCGTGAAGGTATCGAGGCT
ACATGTTCTCAGGCTCAATGCTCCGGATACTCTGTCGACGGTACTTTCCA
ACAATACGCAGTATCTTACGCTCGTCACGTCACCCCTATTCCCGACGGAT
TACCCTTGGAACAAGCCGCTCCTATCTTGTGCGCTGGAGTTACTGTCTAT
CGTGCTCTCTTGAACTCGAAAGCGAGACCTGGACAATATGTCGCCATTGT
GGGTGCTGGAGGAGGTCTAGGACATCTAGCTGTGCAATACGCTGCCGCCA
TGGGACTTCGAGTCATCGCCATCGACACTGGTGACGACAAGAGGAAACTT
TGTGCCTCATACGGTGCCGACAAATTCGTCGATTTCGAGGATCACTCGGA
TCCCGAGAAGTTTATCAAAGCGATCAAGGATATGTGCGATGGCGTAGGAC
CTCACGCTGCTGTAGTTGCGGCAGCTGGTGCCGCCGCTTACGAGCAGGCT
CTCGAGTAATTCGTCCAACCGGTACTCTCGTTGCCGTCGGGTCTCCCCCC
AACACTTCCATAAAGGCCAACGTCTTCTTCCCCGTCTTCTACTCCAAGCG
CAAATCGGGGCCTAACTTGGGAACAGGCAAGATGCCCGTGGAAGCTCCCA
ATTTCCCTGCCCCGGAAAAGGTACCCCCCCCAAATCGAGTTTTGCCCCCT
TGGAAAATTTTTCCCGAAATTTTAAAAACCCCAGGGGAAAAAGGGGCAAA
ATCCCCCGGGGAGAATTTTTTTCCCAAAAAATTTTAAAACCCTTCTCCCC
CCCCCTCCCCCCCCTCCCCCCCCCCTCTTCCCCCCTTTTTTGGGGTTTTT
AACCTTTTTCCCCCCCGGGGGCCCCCCCCTTTCCCGGGGGGCTCGGGGGG
GGGGGCCCCCCCGAGGAAAAAGGAGGGGGGAGAAA
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