DY258036

Overview
NameDY258036
Unique NameDY258036
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1172
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14249 contig Ccv1_Contig14249:26..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THET2 (Pseudouridine-5'-phosphate glycosidase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=psuG PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.842e-42
Identity = 109/235 (46.38%), Postives = 144/235 (61.28%), Query Frame = 1
Query:  169 VALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPI----PREHAAFGRVIESAIQSALRE 861
            VALES +++HG+PYP N E A  +E  VR  GA P TIA++ G   VGLS EE+E LA  G  A+K +  ++A ++A   +  TTV+AT+  A + GIPVF TGGIGGVH       D S+DL  L RTP+ VVS+G K+ILD+  TLE LET GV V  Y+T+  PAFF+  S   VP RVD+P + AR+      L LG G+++  P+    P E  A    +E A + A RE
Sbjct:    6 VALESAVLTHGLPYPLNLEVALALEEAVREEGATPKTIALVRGEVRVGLSPEEMEALAAGG--AEKASLWNLAALLAQGRSAGTTVAATVHLAHLHGIPVFATGGIGGVH---PEPYDESADLVALSRTPILVVSSGPKAILDLRATLERLETLGVSVVGYRTDRLPAFFSPDSPFPVPARVDTPMEAARVYLRARALGLG-GVLLVNPVSQGLPYEQVALW--VEEAGRMAARE 232          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_CORA7 (Pseudouridine-5'-phosphate glycosidase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=psuG PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 7.001e-42
Identity = 97/249 (38.96%), Postives = 143/249 (57.43%), Query Frame = 1
Query:  118 VKISPEVSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHAAFGRVIESAIQSALREA 864
            ++ S EV  ALS+G  ++ LES ++SHG+PYP+N E     + I+R+NG VPA   I +   C+G S +++E L     K  K + RDIA  +A    GATT SA++    + GI +F T G+GGVHR    T+D+S+DL E+      VVSAG+K  LDIP+T E LE+ GV V  + T+EFPAF+   SG+ +      P + A     +++     G +I V   +E A    ++E A+Q +L  A
Sbjct:    6 IEYSDEVQNALSNGLPILGLESNVLSHGLPYPRNLEMFNACDEIIRSNGVVPALTFIRDKRICIGASPKDVELLTD-DPKPIKVSARDIALCIAQGKVGATTASASIAICELAGIRIFSTAGLGGVHRDFSETLDVSADLHEISSRKTIVVSAGVKKFLDIPKTSEVLESLGVPVVGFGTSEFPAFYCRKSGAFLESFSQDPIEIATAAATHIETVGPGGFLILVAPSKEIALDDELVEKAVQRSLINA 253          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THELT (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=psuG PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 2.753e-38
Identity = 95/216 (43.98%), Postives = 130/216 (60.19%), Query Frame = 1
Query:  166 VVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHA 813
            ++ALEST+I+HG+P+P N +TA E+E +    G    TI I+ G   VGLS EE+ ++A       K    +I   +A +   ATTVSATM  A +  I VF TGGIGGVH+  +   D+S DL EL RT + VVSAG KSILD+  T+E LET  + V  YKT+E PAF+ +++   +  RVDS E+ A +     K  L   +++  PIP EHA
Sbjct:    4 ILALESTVIAHGLPFPINIDTAVELEELAAETGCSAKTIGIIAGQIKVGLSREEIVQIASR-KDVLKIGTAEIPFALAKKMWAATTVSATMRIAHLNNIKVFATGGIGGVHKIDQ--WDVSQDLAELSRTRMIVVSAGPKSILDLRSTVEMLETFQITVVGYKTDELPAFYCKSTSIHIN-RVDSFEEIASIFLFKEKFNLPGAVLVFNPIPDEHA 215          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THEMA (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga maritima GN=psuG PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 5.192e-37
Identity = 91/246 (36.99%), Postives = 138/246 (56.10%), Query Frame = 1
Query:  136 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHAAFGRVIESAIQSALREAREK 873
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DL E+  +   +VS+GIKSILD+  T E LET  + +  ++TNEFP FF+  SG +VP R+++ E+  ++ +   +++L   +++  P+P E+      IE  ++    E   K
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVP-RIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGK 242          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THEP1 (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=psuG PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 6.781e-37
Identity = 97/260 (37.31%), Postives = 143/260 (55.00%), Query Frame = 1
Query:  136 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHAAFGRVIESAIQSALREAREKI*QVMQRLLSCLQE 915
            +   +  G+ VV +E+T+  HG+P  +  E  +  + I R  G     I IL+G   VG+S EELE + + G  A K   R+I   VA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DL E+  +   +VS+GIKSILD+  T E LET  + +  +KT+EFP FF+  SG +VP RV+S E+  ++ +   ++     +++  P+P E+      IE  ++    EA  K  +V   LL  L E
Sbjct:    3 IESRIEKGNPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLVVIGILKGKIIVGMSEEELETMMREG--ADKIGTREIPIAVAKGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMASSRTILVSSGIKSILDVEATFEMLETLEIPLVGFKTDEFPLFFSRKSGRRVP-RVESVEEVLKIYETMREIGFEKTLMVLNPVPEEYEVPHDEIERLLEKIELEAEGK--EVTPFLLKKLAE 254          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THESQ (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga sp. (strain RQ2) GN=psuG PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.157e-36
Identity = 91/246 (36.99%), Postives = 138/246 (56.10%), Query Frame = 1
Query:  136 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHAAFGRVIESAIQSALREAREK 873
            +   +  G  VV +E+T+  HG+P  +  E  +  + I R  G   A I IL+G    G+S EELE + + G  A K   R+I  VVA   N ATTVSAT+F +  +GI V VTGG GGVH      +D+S DL E+  +   +VS+GIKSILD+  T E LET  + +  ++T+EFP FF+  SG +VP RV++ E+  ++ +   +++L   +++  P+P E+      IE  ++    E   K
Sbjct:    3 IESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREG--ADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVH---PGRVDVSQDLTEMSSSRAILVSSGIKSILDVEATFEMLETLEIPLIGFRTDEFPLFFSRKSGRRVP-RVENVEEVLKIYETMKEIELEKTLMVLNPVPEEYEVPHDEIERLLEKIELEVEGK 242          
BLAST of DY258036 vs. ExPASy Swiss-Prot
Match: PSUG_THENN (Pseudouridine-5'-phosphate glycosidase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=psuG PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.847e-35
Identity = 88/238 (36.97%), Postives = 131/238 (55.04%), Query Frame = 1
Query:  136 VSEALSHGHAVVALESTIISHGMPYPQNFETAKEVEAIVRNNGAVPATIAILEGLPCVGLSTEELERLAKLGSKAQKTARRDIAHVVATRGNGATTVSATMFFASMVGIPVFVTGGIGGVHRRGEHTMDISSDLKELGRTPVAVVSAGIKSILDIPRTLEYLETHGVCVAAYKTNEFPAFFTETSGSKVPCRVDSPEDCARLIDVNMKLKLGSGIVIGVPIPREHAAFGRVIESAIQS 849
            V   L      V +E+T+  HG+P  +  E  ++ + I    G   A + +L+G   +G++ +EL  +   GS  +K   R+I   +A   N ATTVSAT+F     GI V VTGG GGVH  G   +DIS DL E+  + + +VS+GIKSILD+  T E LET  + V  + T+EFP FF+  SG KV  RV++ E+  R+     +LKL   +++  P+P EH      IE  +++
Sbjct:    3 VENRLEKEKPAVGMETTVFVHGLPRKEAIELFRKAKKISEEMGFQLAVVGVLKGKIILGMNEDELTIMMNEGS--EKIGTREIPIALAKGMNAATTVSATIFLCKRFGIDVVVTGGTGGVHPGG---VDISQDLTEMASSRIILVSSGIKSILDVDATFEMLETLEIPVVGFMTDEFPLFFSRKSGKKVK-RVENVEEILRIYRTMEELKLEKTLMVLNPVPEEHEVPREEIEHLLEN 234          

HSP 2 Score: 24.6386 bits (52), Expect = 1.847e-35
Identity = 10/29 (34.48%), Postives = 18/29 (62.07%), Query Frame = 3
Query:  876 ITGNAETPFLLARVNDLTGGFSLPQTFAL 962
            + G   TP+LL ++ ++TGG +L    +L
Sbjct:  239 VEGKDVTPYLLRKLVEITGGRTLKANLSL 267          
The following BLAST results are available for this feature:
BLAST of DY258036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PSUG_THET21.842e-4246.38Pseudouridine-5'-phosphate glycosidase OS=Thermus ... [more]
PSUG_CORA77.001e-4238.96Pseudouridine-5'-phosphate glycosidase OS=Coryneba... [more]
PSUG_THELT2.753e-3843.98Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THEMA5.192e-3736.99Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THEP16.781e-3737.31Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THESQ1.157e-3636.99Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]
PSUG_THENN1.847e-3536.97Pseudouridine-5'-phosphate glycosidase OS=Thermoto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2CH12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258036 ID=DY258036; Name=DY258036; organism=Citrus clementina; type=EST; length=1172bp
GGCTCACTTTCAACAAATTTGGCGGCGTCTTCTTCTGCTTCTTCATCATC
GGCTCTCTCAAGATTGTCCAATATTCAAAATCACTTAAACCCCATTGATT
CACTTGCTAAAAATTTAGTGAAGATATCTCCAGAGGTCAGTGAAGCTTTG
TCGCATGGCCACGCTGTTGTTGCTCTTGAATCCACAATTATTTCCCATGG
GATGCCGTATCCTCAAAATTTTGAGACAGCCAAGGAGGTTGAGGCCATTG
TGAGAAATAATGGAGCAGTTCCTGCAACGATTGCTATTCTAGAGGGCCTT
CCATGCGTAGGTTTGAGTACAGAAGAACTGGAAAGGCTGGCTAAGTTAGG
AAGTAAAGCTCAAAAGACAGCTCGGAGGGACATTGCACATGTTGTGGCTA
CCAGAGGGAACGGAGCAACTACTGTTTCCGCGACCATGTTTTTTGCTTCT
ATGGTTGGCATTCCTGTGTTTGTAACTGGGGGAATTGGAGGTGTACATAG
GCGCGGCGAGCACACTATGGATATTTCATCAGATCTTAAAGAGCTCGGAA
GGACTCCAGTGGCCGTCGTCTCTGCTGGCATAAAGTCAATACTAGATATC
CCCAGGACCCTCGAGTATTTGGAAACTCATGGAGTTTGTGTTGCTGCTTA
TAAGACGAATGAGTTTCCGGCTTTTTTCACTGAAACCAGTGGCTCCAAGG
TGCCTTGTCGCGTTGATAGCCCAGAAGATTGTGCTCGGTTAATAGATGTA
AACATGAAACTTAAGCTTGGATCTGGAATTGTGATTGGTGTCCCAATCCC
AAGAGAACATGCAGCTTTTGGGAGAGTAATTGAGTCTGCAATACAAAGTG
CCCTCAGAGAAGCTAGGGAGAAGATATAACAGGTAATGCAGAGACTCCTT
TCTTGCTTGCAAGAGTGAATGACCTAACTGGAGGCTTTTCACTGCCTCAA
ACATTTGCCTTGTGAAAAATAAATGCTCTTTATCGGAGCTAAGAATTTTT
GTACCACTTGCCCAGCTCAAAAAACAAAAAAAGTAATTAAGGGGACTTTG
TTTTTCCTGGCAAATTTTTCAAAATATTTGGACCTTTTTTCGGGGACGGG
CAAAAGGGGAAAGGAAAAAAAATGGGTTGGAAAAAAAACTTTTAACCTGG
GAAAAGCCGGGCACCATGAAAA
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