DY258044

Overview
NameDY258044
Unique NameDY258044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258044_ssr252 microsatellite DY258044_ssr252:252..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.855e-14
Identity = 34/60 (56.67%), Postives = 46/60 (76.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRG L+  E+  +++LHS+ GNRWSKIA  LPGRTDNEIKN+W T ++K+   + ID
Sbjct:   63 PDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGID 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.035e-14
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD++RG  +  E+ +I+ LH+  GN+WSKIA HLPGRTDNEIKNYW T ++K+   + ID
Sbjct:   64 PDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGID 123          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB12_ARATH (Transcription factor MYB12 OS=Arabidopsis thaliana GN=MYB12 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 2
Query:    5 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            D+KRGN+TP+E+  +++LHS  GNRWS IA HLPGRTDNEIKNYW + + ++
Sbjct:   64 DLKRGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK 115          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 166
            P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   91 PNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 6.576e-14
Identity = 31/55 (56.36%), Postives = 45/55 (81.82%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQAR 166
            P++K+G  T +E+  I++LHSK GN+W+++A HLPGRTDNEIKNYW TR+++  R
Sbjct:   91 PNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB4_ARATH (Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.122e-13
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANS 190
            PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++  +  ID  S
Sbjct:   63 PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTS 125          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYBP_MAIZE (Myb-related protein P OS=Zea mays GN=P PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.499e-13
Identity = 32/52 (61.54%), Postives = 42/52 (80.77%), Query Frame = 2
Query:    5 DVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            DVKRGN++ +E+  I++LH+  GNRWS IA HLPGRTDNEIKNYW + + +Q
Sbjct:   64 DVKRGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ 115          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB6_ARATH (Transcription repressor MYB6 OS=Arabidopsis thaliana GN=MYB6 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ--------ARHLKIDANSTTFQEII 211
            PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++          H +I+ + T   +++
Sbjct:   63 PDLKRGNFTDDEDQIIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKLLSHGIDPQTHRQINESKTVSSQVV 140          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRG  + QE+  I+ LH   GNRWS+IA HLPGRTDNEIKN+W + ++K+ R   ID
Sbjct:   65 PDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQGID 124          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:   63 PDLKRGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGID 122          
The following BLAST results are available for this feature:
BLAST of DY258044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
ODO1_PETHY3.855e-1456.67Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB39_ARATH5.035e-1455.00Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB12_ARATH6.576e-1461.54Transcription factor MYB12 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ6.576e-1456.36Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI6.576e-1456.36Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYB4_ARATH1.122e-1355.56Transcription repressor MYB4 OS=Arabidopsis thalia... [more]
MYBP_MAIZE2.499e-1361.54Myb-related protein P OS=Zea mays GN=P PE=2 SV=1[more]
MYB6_ARATH3.264e-1344.87Transcription repressor MYB6 OS=Arabidopsis thalia... [more]
MYB3_HORVU3.264e-1356.67Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB... [more]
MYB32_ARATH3.264e-1358.33Transcription factor MYB32 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258044 ID=DY258044; Name=DY258044; organism=Citrus clementina; type=EST; length=1017bp
ACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTC
TTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCAC
TTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGT
TCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTC
AAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAC
ACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTAA
TTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCAC
AAATAATATCCCATCAAGTTCCTTACGATCGGGGAGCGATTGATCATCAA
GAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTC
CTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTTT
CGGAGTACCCAACCGGTGGCGACCATTTTCATGCTAGTAATAATGATAGC
AGTGAGTACAACACTTTTGCAAAAGATTTCTGTCAATTTGACAGCAACCG
CTATGACATGGAAAACATCAGCCAGCCGGAAACCATGCCGGCGCCGCTGG
CCGGAGACTTCAACAACTGGGTTCAGGAATATGATTTAGTAGATAACATG
TGGGGAGCATGGATGAACTTTGGCAACTCAGGAACCCATGCGGACATTAA
TGAGTTTAATTAGTCATTTGCCAAGAGGTAATTAGATATTAATCACTAGG
ACAGAGTCATTAGCAACTGTTAATTAATTCTCTACTCAGAATATGAGGTT
AATCGACTGTTTGATTTTTTTATCTAACTTCAAAAATCAAACATATGTCT
NATAAGTGTGCTTTTCAATGTTGGGTTTCTTGTTTTGAACAATAAATTGT
AACTTCACAAAAGTAAATGTTACGGTACAAATTTGATGGCCTTGGCATTA
CCATTTACAATACTACC
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