DY258044

Overview
NameDY258044
Unique NameDY258044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB08_ANTMA (Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   63 PDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGID 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.567e-13
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P++KRG+++PQEQ  I+ +H   GNRWS IA  LPGRTDNE+KNYW T + K+
Sbjct:   63 PNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 115          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.567e-13
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDAN 187
            PD+KRG  +PQE+  I+  HS  GNRWS+IA  LPGRTDNEIKN+W + ++K+ + +   +N
Sbjct:   69 PDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKKMSDTSN 130          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.271e-13
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDANSTTFQEII 211
            PD+KRG  +  E+  I+ELH+  GNRWS+IA  LPGRTDNEIKN+W + ++K+ R   ID   TT + +I
Sbjct:   63 PDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGID--PTTHKPLI 130          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB38_MAIZE (Myb-related protein Zm38 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.271e-13
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRGN T  E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T V+++     ID
Sbjct:   63 PDLKRGNFTADEDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGID 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB30_ANTMA (Myb-related protein 330 OS=Antirrhinum majus GN=MYB330 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.271e-13
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRGN T +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   63 PDLKRGNFTEEEDEIIIKLHSLLGNKWSLIAGALPGRTDNEIKNYWNTHIKRKLVSRGID 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.496e-13
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            PD+KRGN T +E+ +I+ LH   GN+WSKIA  LPGRTDNEIKN W T ++K+
Sbjct:   65 PDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKK 117          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.496e-13
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            PD+KRGN + +E   I++LHS  GN+WS IA  LPGRTDNEIKNYW T ++++     ID
Sbjct:   63 PDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLTSRGID 122          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.620e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P+VKRGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   67 PNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.116e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            PD+KRGN + +E+ +I+ LH   GNRWS IA  LPGRTDNEIKN W T ++K+
Sbjct:   63 PDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKR 115          
The following BLAST results are available for this feature:
BLAST of DY258044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
MYB08_ANTMA3.264e-1356.67Myb-related protein 308 OS=Antirrhinum majus GN=MY... [more]
MYB82_ARATH5.567e-1358.49Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB46_ARATH5.567e-1351.61Transcription factor MYB46 OS=Arabidopsis thaliana... [more]
MYB86_ARATH7.271e-1351.43Transcription factor MYB86 OS=Arabidopsis thaliana... [more]
MYB38_MAIZE7.271e-1358.33Myb-related protein Zm38 OS=Zea mays PE=2 SV=1[more]
MYB30_ANTMA7.271e-1356.67Myb-related protein 330 OS=Antirrhinum majus GN=MY... [more]
MYB1_MAIZE9.496e-1360.38Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB1_HORVU9.496e-1355.00Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]
WER_ARATH1.620e-1258.49Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB4_ORYSJ2.116e-1258.49Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258044 ID=DY258044; Name=DY258044; organism=Citrus clementina; type=EST; length=1017bp
ACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTC
TTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCAC
TTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGT
TCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTC
AAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAC
ACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTAA
TTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCAC
AAATAATATCCCATCAAGTTCCTTACGATCGGGGAGCGATTGATCATCAA
GAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTC
CTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTTT
CGGAGTACCCAACCGGTGGCGACCATTTTCATGCTAGTAATAATGATAGC
AGTGAGTACAACACTTTTGCAAAAGATTTCTGTCAATTTGACAGCAACCG
CTATGACATGGAAAACATCAGCCAGCCGGAAACCATGCCGGCGCCGCTGG
CCGGAGACTTCAACAACTGGGTTCAGGAATATGATTTAGTAGATAACATG
TGGGGAGCATGGATGAACTTTGGCAACTCAGGAACCCATGCGGACATTAA
TGAGTTTAATTAGTCATTTGCCAAGAGGTAATTAGATATTAATCACTAGG
ACAGAGTCATTAGCAACTGTTAATTAATTCTCTACTCAGAATATGAGGTT
AATCGACTGTTTGATTTTTTTATCTAACTTCAAAAATCAAACATATGTCT
NATAAGTGTGCTTTTCAATGTTGGGTTTCTTGTTTTGAACAATAAATTGT
AACTTCACAAAAGTAAATGTTACGGTACAAATTTGATGGCCTTGGCATTA
CCATTTACAATACTACC
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