DY258044

Overview
NameDY258044
Unique NameDY258044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1017
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258044_ssr252 microsatellite DY258044_ssr252:252..266. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.609e-12
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKID 181
            P VKRG +T  E+  IL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+     ID
Sbjct:   74 PSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGID 133          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.155e-12
Identity = 30/53 (56.60%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P+V RGN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   63 PNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 115          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.371e-11
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   65 PNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.371e-11
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P+V +GN T QE+  I+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct:   65 PNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.990e-11
Identity = 29/53 (54.72%), Postives = 40/53 (75.47%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P +KRGN++  E+  I+ LH+  GNRWS IA  LPGRTDNEIKN+W + ++K+
Sbjct:   65 PGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of DY258044 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 8.888e-11
Identity = 28/53 (52.83%), Postives = 41/53 (77.36%), Query Frame = 2
Query:    2 PDVKRGNLTPQEQMSILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQ 160
            P +KR  ++ +E+ +IL  HS  GN+WS+IA+ LPGRTDNEIKNYW + ++K+
Sbjct:   61 PGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK 113          
The following BLAST results are available for this feature:
BLAST of DY258044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
MYB5_ARATH3.609e-1256.67Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYB23_ARATH6.155e-1256.60Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
GL1_ARATH1.371e-1154.72Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY1.371e-1154.72Trichome differentiation protein GL1 OS=Arabidopsi... [more]
TT2_ARATH3.990e-1154.72Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
LAF1_ARATH8.888e-1152.83Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DA10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258044 ID=DY258044; Name=DY258044; organism=Citrus clementina; type=EST; length=1017bp
ACCTGATGTGAAGAGAGGCAATCTCACTCCACAAGAACAAATGTCAATTC
TTGAACTCCATTCTAAGTGGGGTAATAGGTGGTCGAAGATTGCTCAGCAC
TTACCAGGAAGGACTGACAATGAAATCAAGAACTATTGGAGAACTCGTGT
TCAGAAGCAAGCACGGCATCTAAAGATAGACGCAAATAGCACGACATTTC
AAGAGATTATTCGATGTTTTTGGATGCCAAGATTGCTTCAAAAGATGGAC
ACATCATCATCATCATCACCATCGGCTTTATCTCAGAATCCTACAATTAA
TTCTCAGCCGTTTGATCATGCTTTTCATCATCAGGGATCAGCATCGGCAC
AAATAATATCCCATCAAGTTCCTTACGATCGGGGAGCGATTGATCATCAA
GAATTGAATTCATCATCAGACTCGGAGCACGGCATTGGCACCAGCACTTC
CTGCATTTCTTCATCCGAATCAATGAATTTTTCCCAAGTGTCTCAGTTTT
CGGAGTACCCAACCGGTGGCGACCATTTTCATGCTAGTAATAATGATAGC
AGTGAGTACAACACTTTTGCAAAAGATTTCTGTCAATTTGACAGCAACCG
CTATGACATGGAAAACATCAGCCAGCCGGAAACCATGCCGGCGCCGCTGG
CCGGAGACTTCAACAACTGGGTTCAGGAATATGATTTAGTAGATAACATG
TGGGGAGCATGGATGAACTTTGGCAACTCAGGAACCCATGCGGACATTAA
TGAGTTTAATTAGTCATTTGCCAAGAGGTAATTAGATATTAATCACTAGG
ACAGAGTCATTAGCAACTGTTAATTAATTCTCTACTCAGAATATGAGGTT
AATCGACTGTTTGATTTTTTTATCTAACTTCAAAAATCAAACATATGTCT
NATAAGTGTGCTTTTCAATGTTGGGTTTCTTGTTTTGAACAATAAATTGT
AACTTCACAAAAGTAAATGTTACGGTACAAATTTGATGGCCTTGGCATTA
CCATTTACAATACTACC
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