DY258046

Overview
NameDY258046
Unique NameDY258046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 3
Query:   42 WYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXX-AGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISL 347
            WYKT F  P G DP+ LN+ +MG+G  W+NGQ IGR W                G Y   KC T  GKP+Q  YHVPRSWLKPS NLLV+FE+ GG P  IS+
Sbjct:  653 WYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGRYWNIISQKDGCDRTCDYRGAYNSDKCTTNCGKPTQTRYHVPRSWLKPSSNLLVLFEETGGNPFKISV 755          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.809e-21
Identity = 47/95 (49.47%), Postives = 58/95 (61.05%), Query Frame = 3
Query:   33 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEK 317
            P+TWYK +F  P G DP+ALN+G+MGKG  W+NGQSIGR W                        TY G PSQ WYH+PRS+LKP+ NLLV+ E+
Sbjct:  607 PLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSIGRYW--------------------VSFHTYKGNPSQIWYHIPRSFLKPNSNLLVILEE 681          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL6_ARATH (Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.203e-21
Identity = 51/105 (48.57%), Postives = 65/105 (61.90%), Query Frame = 3
Query:   33 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISL 347
            P+ WYKTTF  P G+ P+ L+M +MGKG +W+NG+SIGR W                        T  G+PSQ  YH+PR++LKPSGNLLVVFE+ GG+P  ISL
Sbjct:  618 PLAWYKTTFDGPNGDGPVGLHMSSMGKGEIWVNGESIGRYWVSFL--------------------TPAGQPSQSIYHIPRAFLKPSGNLLVVFEEEGGDPLGISL 702          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.944e-20
Identity = 49/112 (43.75%), Postives = 63/112 (56.25%), Query Frame = 3
Query:   27 KLP----MTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSG-NLLVVFEKWGGEPHWI 341
            KLP    ++WYK  F  P G DP+ +++  +GKG VWINGQSIGR WP                G Y   KC    GKP+Q WYHVPRS+L   G N + +FE+ GG+P  +
Sbjct:  617 KLPADRMLSWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSIGRYWPSFNSSDEGCTEECDYRGEYGSDKCAFMCGKPTQRWYHVPRSFLNDKGHNTITLFEEMGGDPSMV 728          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 9.070e-20
Identity = 49/113 (43.36%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   27 KLP----MTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSG-NLLVVFEKWGGEPHWIS 344
            KLP    +TWYK  F  P G +P+ +++  +GKG  WINGQSIGR WP                G Y   KC    GKP+Q WYHVPRS+L  SG N + +FE+ GG P  ++
Sbjct:  615 KLPTGRMLTWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGRYWPSFNSSDDGCKDECDYRGAYGSDKCAFMCGKPTQRWYHVPRSFLNASGHNTITLFEEMGGNPSMVN 727          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.185e-19
Identity = 47/105 (44.76%), Postives = 61/105 (58.10%), Query Frame = 3
Query:   33 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISL 347
            P+TWYKTTF  PPGND + LN+ +MGKG VW+NG+SIGR W                           G+PSQ  YH+PR +L P  NLLV+ E+ GG+P  I++
Sbjct:  582 PLTWYKTTFSTPPGNDAVTLNLTSMGKGEVWVNGESIGRYWVSFKAPS--------------------GQPSQSLYHIPRGFLTPKDNLLVLVEEMGGDPLQITV 666          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.502e-17
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 3
Query:   30 LPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEP 332
            LP+TWYK  F  P G+DP+ ++M +M KGM+++NG+ IGR W                        T  G PSQ  YH+PR++LKP GNLL++FE+  G+P
Sbjct:  624 LPITWYKRYFDEPDGDDPIVVDMSSMSKGMIYVNGEGIGRYWTSFI--------------------TLAGHPSQSVYHIPRAFLKPKGNLLIIFEEELGKP 704          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 43/122 (35.25%), Postives = 66/122 (54.10%), Query Frame = 3
Query:    3 AQGTSLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP------XXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWL-KPSGNLLVVFEKWGGEPHWISL 347
            +  +++ +  P TWYKTTF  P G D + +++  + KG+ W+NG S+GR WP                         +KC T  G+PSQ  YHVPRS+L K   N L++FE+ GG+P  +++
Sbjct:  593 SHNSTIPINRPFTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGRYWPSYVAADMPGCHHCDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAV 714          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA13_ORYSJ (Beta-galactosidase 13 OS=Oryza sativa subsp. japonica GN=Os10g0330600 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3
Query:   15 SLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXAGTYTE----KKCRTYWGKPSQPWYHVPRSWLK-PSGNLLVVFEKWGGEP 332
            ++ +  P TWYKTTF  P G D + +++  + KG+ W+NG ++GR WP                G +      +KC T  G+PSQ +YHVPRS+LK    N L++FE+ GG+P
Sbjct:  617 TVPINRPFTWYKTTFQAPAGQDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHHCDYRGVFQAEGDGQKCLTGCGEPSQRYYHVPRSFLKNGEPNTLILFEEAGGDP 729          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA10_ORYSJ (Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica GN=Os06g0628500 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.566e-16
Identity = 43/117 (36.75%), Postives = 66/117 (56.41%), Query Frame = 3
Query:   15 SLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXAGTYTE----KKCRTYWGKPSQPWYHVPRSWLK-PSGNLLVVFEKWGGEPHWIS 344
            ++ +  P TWYKTTF  P G D + +++  + KG+ W+NG ++GR WP                G +      +KC T  G+PSQ +YHVPRS+LK    N +++FE+ GG+P  +S
Sbjct:  598 TVPINKPFTWYKTTFQAPAGEDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHHCDYRGVFQAEGDGQKCLTGCGEPSQRFYHVPRSFLKNGEPNTVILFEEAGGDPSHVS 714          
The following BLAST results are available for this feature:
BLAST of DY258046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGAL9_ARATH1.352e-2351.46Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGA16_ARATH4.809e-2149.47Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ARATH8.203e-2148.57Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_BRAOL6.944e-2043.75Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGAL7_ARATH9.070e-2043.36Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGAL7_ORYSJ1.185e-1944.76Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGA12_ORYSJ5.502e-1741.58Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGA14_ORYSJ7.186e-1735.25Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]
BGA13_ORYSJ3.566e-1638.05Beta-galactosidase 13 OS=Oryza sativa subsp. japon... [more]
BGA10_ORYSJ3.566e-1636.75Putative beta-galactosidase 10 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258046 ID=DY258046; Name=DY258046; organism=Citrus clementina; type=EST; length=781bp
GGGCACAGGGAACATCGTTGGCCCTAAAATTACCGATGACGTGGTACAAG
ACTACTTTCATTGTACCGCCAGGCAACGACCCGTTAGCTTTAAACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAAAGTATTGGGCGCC
GCTGGCCTGGATATAGAAGAAATGGAAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAAGAAATGCCGAACTTACTGGGGAAAGCCCTCTCA
ACCATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAAAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
AAGAGAACAACATAAACAGCTACAACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATATTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAACGTCATTCAGTCTGATAGGCAAAAGTGTTAGT
TCCGCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCATCTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGCGA
AAGTAATACATAGCAGCTTTTGAATTGCATC
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