DY258046

Overview
NameDY258046
Unique NameDY258046
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6825 contig Ccv1_Contig6825:398..1178. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.019e-15
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 3
Query:   33 PMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEKWGGEPHWISLL 350
            P+TWY+  F  P G DP+ +++  MGKG +++NG+ +GR W                           GKPSQ  YHVPRS L+P GN L+ FE+ GG+P  I +L
Sbjct:  624 PLTWYRRRFDPPSGTDPVVIDLTPMGKGFLFVNGEGLGRYWVSYHHAL--------------------GKPSQYLYHVPRSLLRPKGNTLMFFEEEGGKPDAIMIL 709          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.943e-15
Identity = 41/118 (34.75%), Postives = 65/118 (55.08%), Query Frame = 3
Query:   15 SLALKLPMTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWP--XXXXXXXXXXXXXAGTYTEK----KCRTYWGKPSQPWYHVPRSWLKP-SGNLLVVFEKWGGEPHWISL 347
            ++ +  P TWYK TF  P G D + +++  + KG+ W+NG ++GR WP                G +  +    +C T  G+PSQ +YHVPRS+L     N L++FE+ GG+P  ++L
Sbjct:  617 TIPINRPFTWYKATFEAPSGEDAVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMAGCHRCDYRGAFQAEGDGTRCLTGCGEPSQRYYHVPRSFLAAGEPNTLLLFEEAGGDPSGVAL 734          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.826e-13
Identity = 36/94 (38.30%), Postives = 49/94 (52.13%), Query Frame = 3
Query:   36 MTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEK 317
            MTWY+T F  P      A+ M  MGKG++W+NG+ +GR W                           G+P+Q  YH+PRS+LKP  NLLV+FE+
Sbjct:  635 MTWYQTYFDAPESQSAAAIRMNGMGKGLIWVNGEGVGRYWMSFLSPL--------------------GQPTQIEYHIPRSFLKPKKNLLVIFEE 708          
BLAST of DY258046 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 34/94 (36.17%), Postives = 50/94 (53.19%), Query Frame = 3
Query:   36 MTWYKTTFIVPPGNDPLALNMGAMGKGMVWINGQSIGRRWPXXXXXXXXXXXXXAGTYTEKKCRTYWGKPSQPWYHVPRSWLKPSGNLLVVFEK 317
            +TWY+T F  P       + M  MGKG++W+NG+ +GR W                    +   +  G+P+Q  YH+PRS+LKP  NLLV+FE+
Sbjct:  632 LTWYQTYFDAPESVSAATIRMHGMGKGLIWVNGEGVGRYW--------------------QSFLSPLGQPTQIEYHIPRSFLKPKKNLLVIFEE 705          
The following BLAST results are available for this feature:
BLAST of DY258046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
BGA11_ORYSJ3.019e-1538.68Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGAL1_ORYSJ3.943e-1534.75Beta-galactosidase 1 OS=Oryza sativa subsp. japoni... [more]
BGA13_ARATH2.826e-1338.30Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ARATH5.329e-1236.17Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258046 ID=DY258046; Name=DY258046; organism=Citrus clementina; type=EST; length=781bp
GGGCACAGGGAACATCGTTGGCCCTAAAATTACCGATGACGTGGTACAAG
ACTACTTTCATTGTACCGCCAGGCAACGACCCGTTAGCTTTAAACATGGG
TGCAATGGGAAAGGGGATGGTTTGGATCAATGGTCAAAGTATTGGGCGCC
GCTGGCCTGGATATAGAAGAAATGGAAATTGTGGTGGTTGTAATTATGCT
GGAACTTACACCGAGAAGAAATGCCGAACTTACTGGGGAAAGCCCTCTCA
ACCATGGTATCACGTTCCCCGCTCATGGCTGAAGCCGAGTGGAAACCTGT
TGGTTGTGTTTGAAAAATGGGGCGGTGAACCACATTGGATCTCTTTGCTC
AAGAGAACAACATAAACAGCTACAACAATTATTTTCTTTTTCTTTTTCTC
ATTCTTCAATAATTCAAGCATACGCTTCCCTCATTTGCCAAGGTGATGAT
GGTTTGACTCCGACAAACGGGCAAACCAAAGTGTCCAACCATACCCATAA
TCTGGCCAAAGCCAAGAAGTATAGATTGTGAAGTTGTTGCAAGGATGCTC
CTTGTTGTATGTACATAGTCATATTCAAGCTATATATTTGTCAATATAGC
TCTGCAAGCATACTTAAACGTCATTCAGTCTGATAGGCAAAAGTGTTAGT
TCCGCAAACATTCATGTAGGCTCGCTGGGTTTCACTCTTCATCATCTACA
AGTTTATAGTGGAAATCTTTTATTTCCTTGTCATTTAAAAATAAGTGCGA
AAGTAATACATAGCAGCTTTTGAATTGCATC
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