DY258048

Overview
NameDY258048
Unique NameDY258048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1117
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13200 contig Ccv1_Contig13200:615..1736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRAE (Tryptophanyl-tRNA synthetase OS=Pyrobaculum aerophilum GN=trpS PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.045e-35
Identity = 93/257 (36.19%), Postives = 139/257 (54.09%), Query Frame = 3
Query:   12 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVDAFMAVR 782
            + +EE+   A ENA D+IA GF   +  +  D   +    Y   V+VAK +T+N V   FGFT   +IG + +P +Q               ++    LIPCAIDQDPYFR+ RD+A  +GY KP+ + S F  AL GE+ KMSAS+P+SAIY  D            AF+GG+ + E  RK G N EV     Y   F  DDA +E I+++  +G +L GE K +L + +T+ ++ H+  R     ++ +  ++V+
Sbjct:  123 MKLEEATNWAYENALDVIALGFSPERLHLIIDTKDIK-PLYPIAVRVAKKLTWNTVKATFGFTDSTNIGLIFYPSLQIAVAFLPTELR----REATPVLIPCAIDQDPYFRLARDIADALGYPKPSTLYSKFIMALTGES-KMSASNPDSAIYTLDDEKTVRRKVMN-AFTGGRPTAEEQRKYGGNPEVCPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEKITKFLKEHRERREKARGKVDEYRLSVK 372          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_PYRAR (Tryptophanyl-tRNA synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=trpS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.326e-34
Identity = 95/251 (37.85%), Postives = 133/251 (52.99%), Query Frame = 3
Query:   12 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVK----QRLAKVLTELVERHQVARAAVTD 752
            + +EE+   A ENA D+IA GF   K  +  D   +    Y   V+VAK +T+N V   FGFT   +IG + +P +Q               K+    LIPCAIDQDPYFR+ RD+A  + Y KP  + S F  AL GE+ KMSAS+P+SAIY  D            AF+GG+ + E  RK G N ++     Y   F  DDA +E I+++  +G +L GE K    ++++K L E  ER + AR  V +
Sbjct:  123 MKLEEATGWAYENALDVIALGFGPDKLHLIVDTKDIA-PLYPIAVRVAKKLTWNTVKATFGFTDSSNIGLIFYPSLQIAVAFLPTELK----KEPTPVLIPCAIDQDPYFRLARDIADSLSYPKPTTLYSKFIMALTGES-KMSASNPDSAIYTMDDDKTVKHKILN-AFTGGRPTAEEQRKYGGNPDICPVFHYHMLFDPDDASVEKIRQDCKSGALLCGECKLKLHEKISKFLKEHRERREKARGKVDE 366          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW2_HALSA (Tryptophanyl-tRNA synthetase 2 OS=Halobacterium salinarium GN=trpS2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.395e-28
Identity = 93/261 (35.63%), Postives = 135/261 (51.72%), Query Frame = 3
Query:    3 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH--KPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTD--EMVDAF 770
            +K+ +  E+    R N +D++A GFD   T I  D        Y      A  V +  +  ++G    D++G+  +P VQ                +H   L+P A+DQDP+ R++RDVA +  Y   KP  +   F P+L G  GKMS+S    +I +TDS          +A++GG+ SVE HR  G     D+P +YLS F E DDAEL  I++EY AG +L+GE+K   A  +TE +  HQ  RAA+ D  E +DAF
Sbjct:  112 FKDQTPAETGDYLRANLRDLLAVGFDPELTRIVVD-TRDADVLYPLATAFAGDVRHATLQNVYG--EPDNVGQAFYPAVQTAHLLLPQLVHG----EH-ETLVPIAVDQDPHVRVSRDVAAKARYPVGKPGALLMQFLPSLAGP-GKMSSS-AGVSIRLTDSPDTVREKVRTHAYTGGRASVEEHRAKGGVPAEDVPFQYLSAFFEPDDAELARIEREYRAGDLLSGELKDLAADRITEFLAAHQRRRAALGDVTEALDAF 362          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_METKA (Tryptophanyl-tRNA synthetase OS=Methanopyrus kandleri GN=trpS PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.287e-21
Identity = 76/258 (29.46%), Postives = 123/258 (47.67%), Query Frame = 3
Query:    6 KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLED----DAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVD 764
            +N+ ++ + R+A  E   +  A G D+                 +  + +A  +T+N V   +GFTGE ++G    P VQA                  R L+P  +DQDP+ R+TRD+A +    KPA     F   L G  GKMS+S PN+AI++TD            A +GG  ++E HR+ G N +  +  + + + L D    D +L  I+K+   G ++ GE K+ + + L E++E  +  R  V DE+ D
Sbjct:  110 RNMDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQSERKTVQRMALLLAGRLTWNTVKNTYGFTGETNMGHAFAPIVQAADILHPQEIEGPH-----RVLVPVGVDQDPHLRLTRDIAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLTDDPETAKEKVWN-AKTGGGATLEEHREHGGNPDECVVYELMVYHLADRIGGDEKLREIRKKCREGDIICGECKRMVGEALAEILEELERRREDVRDELPD 359          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_METJA (Tryptophanyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=trpS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.923e-17
Identity = 75/254 (29.53%), Postives = 125/254 (49.21%), Query Frame = 3
Query:    6 KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVK-YLSFFLEDDAELEHIKKEYGAGGMLTGEVK----QRLAKVLTELVERHQVAR 737
            +N+S E ++ LA  E   + IA G D  K  ++    Y      K++  + +K   ++++  I+GF GE +IG V F P+  V              +    ++P  IDQDP+ R+TRD+A R    K   P+     F   L G  GKMS+S P +AI++TD            A +GG+E++E H+K G   E  +  + +L   + DD EL  I ++  +G +  G+ K    +R+ + L +L E+ + A+
Sbjct:  113 RNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLALILSKRTNWSEMKAIYGFKGETNIGHV-FAPIVQVADILHPQLDENLSPEPKPVVVPVGIDQDPHIRLTRDIANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVKKKIFS-AKTGGRETLEEHKKYGGVPEECVVYELFLYHLILDDKELAEIYQKCRSGELTCGKCKKMAYERVVEFLKDLKEKREQAK 359          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_METTH (Tryptophanyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=trpS PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.200e-13
Identity = 68/250 (27.20%), Postives = 112/250 (44.80%), Query Frame = 3
Query:    6 KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVXXXXXXXXXXXXGKDHLRCLIPCAIDQDPYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLE-DDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVAR 737
            + +  E+S+R+A  E     IA G D+ K  I                 +A  V +N++  I+GFTG   +  +  P +Q               +     ++P   DQDP+ R+TRD+A R     G+  P+     F   L G  GKMS++ P SAI+++D+           A +GG+E+++  R+LG   E  I  + L + +   D+ LE I +    G ++ GE K   A+ + +  E   V R
Sbjct:  108 RGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENLMVEDLAYVLAGKVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDELGGPRP---VIVPVGPDQDPHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMSSNRPKSAIFLSDTPEEAEAKIRN-AKTGGRETLKEQRELGGVPEECIIYETLLYHMSGSDSRLEEIYESCRNGTLMCGECKNNTAEFIRKFFEELSVKR 351          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_HYPBU (Tryptophanyl-tRNA synthetase OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=trpS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.426e-12
Identity = 50/158 (31.65%), Postives = 78/158 (49.37%), Query Frame = 3
Query:  306 LIPCAIDQDPYFRMTRDVAPR----IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLE-VDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQVARAAVTDEMVD 764
            ++P   DQDP+ R+TRD+A R    +G  +PA     F   L G   KMS+S P   I++TD            A +GG+ +VE  R+LG   E   +   YL   +EDD +L  I ++     +L G  K+  A++L + +E HQ       D +++
Sbjct:  212 VVPVGADQDPHIRLTRDIAARFENELGLRRPASTYHRFQTGLDGN--KMSSSRPEYTIFLTDPVDIAVRKLKR-ALTGGRATVEEQRRLGGEPEKCTVYEFYLYHLIEDDTQLRKIYEDCRGSRLLCGPDKEYAAELLAKFLEEHQRRLERARDRVLE 366          
BLAST of DY258048 vs. ExPASy Swiss-Prot
Match: SYW_AERPE (Tryptophanyl-tRNA synthetase OS=Aeropyrum pernix GN=trpS PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 5.992e-11
Identity = 49/146 (33.56%), Postives = 71/146 (48.63%), Query Frame = 3
Query:  306 LIPCAIDQDPYFRMTRDVAPR----IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEV-DIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAKVLTELVERHQ 728
            ++P   DQDP+ R+TRD+A R    +   +PA       P L G   KMS+S P+S I++TD            A +GG+ + E  R+LG   EV  +    L   + DD E++HI      G +L GE KQ   + L   +  HQ
Sbjct:  211 VVPVGADQDPHLRLTRDLADRMAGVVELERPASTYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQRRLGGVPEVCSVYHMDLYHLMPDDGEVKHIYTSCRLGKILCGECKQIAWEKLERFLAEHQ 353          
The following BLAST results are available for this feature:
BLAST of DY258048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SYW_PYRAE2.045e-3536.19Tryptophanyl-tRNA synthetase OS=Pyrobaculum aeroph... [more]
SYW_PYRAR1.326e-3437.85Tryptophanyl-tRNA synthetase OS=Pyrobaculum arsena... [more]
SYW2_HALSA5.395e-2835.63Tryptophanyl-tRNA synthetase 2 OS=Halobacterium sa... [more]
SYW_METKA1.287e-2129.46Tryptophanyl-tRNA synthetase OS=Methanopyrus kandl... [more]
SYW_METJA1.923e-1729.53Tryptophanyl-tRNA synthetase OS=Methanocaldococcus... [more]
SYW_METTH2.200e-1327.20Tryptophanyl-tRNA synthetase OS=Methanobacterium t... [more]
SYW_HYPBU1.426e-1231.65Tryptophanyl-tRNA synthetase OS=Hyperthermus butyl... [more]
SYW_AERPE5.992e-1133.56Tryptophanyl-tRNA synthetase OS=Aeropyrum pernix G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DB03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258048 ID=DY258048; Name=DY258048; organism=Citrus clementina; type=EST; length=1117bp
GGTGGAAAAATCTTTCTGTTGAGGAGAGTCAAAGACTTGCAAGGGAAAAT
GCAAAAGACATAATTGCCTGTGGTTTTGATGTAACAAAGACCTTTATCTT
CTCTGATTTTGATTATGTCGGTGGTGCCTTCTACAAGAACATGGTGAAGG
TTGCGAAGTGTGTCACATATAACAAGGTGGTTGGCATATTTGGCTTCACT
GGTGAAGATCATATTGGAAAAGTTAGTTTTCCACCAGTTCAGGCGGTTCC
ATCATTTCCAAGTTCTTTCCCACACCTTTTCTCAGGCAAGGATCACCTTC
GTTGCTTAATTCCTTGCGCCATTGACCAGGACCCTTACTTCAGAATGACA
CGGGATGTTGCTCCTCGGATAGGTTATCACAAGCCTGCATTAATTGAGTC
GTCATTTTTCCCTGCATTGCAGGGGGAGACAGGAAAAATGTCAGCTAGTG
ATCCTAATTCTGCCATATATGTTACTGATTCTGCGAAGGCTATTAAGAAC
AAGATAAACAAGTATGCATTTTCTGGCGGACAAGAAAGTGTGGAATTACA
TAGAAAATTAGGGGCAAATCTTGAGGTAGATATACCAGTAAAATATCTAA
GTTTTTTCCTAGAGGATGATGCAGAACTAGAACACATTAAAAAGGAGTAT
GGTGCAGGTGGCATGCTAACGGGGGAAGTTAAGCAACGCCTTGCTAAAGT
TTTGACTGAATTGGTGGAAAGACACCAGGTGGCTCGTGCTGCTGTAACTG
ATGAGATGGTCGATGCATTTATGGCAGTGAGACCCCTTCCCAATATGTTC
GACTAGTGTTGAGATGATGAACTTGGGCGGATTTCCATCCATTCTATTTC
CCAACCTGAAACATGCATGAGAGATGTTTCAGCTTCAAGCTACACATGAT
GGATTGGATTTCTTTTTTTACCAATTTCTTTTTCAGAATATCAGTTAAAA
ATAGAGTTTTTCCAATGGGACCTTTAGAATAAAAGACGTGTAAGGATAAT
GTCAGGATGGGGATGGAGGCTGGATTCTCTTGCATTATCATAATTTTGAC
CACCTAATTGGTTTCAATTTGGTTAGAACCACACGCCGGTTTTTATTCCC
AAGTTTGTTTTAAGCCC
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