DY258051

Overview
NameDY258051
Unique NameDY258051
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13542 contig Ccv1_Contig13542:711..1687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258051 vs. ExPASy Swiss-Prot
Match: NECAP_DROME (NECAP-like protein CG9132 OS=Drosophila melanogaster GN=CG9132 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 7.844e-33
Identity = 80/206 (38.83%), Postives = 117/206 (56.80%), Query Frame = 2 
Query:   98 FEHTLLVVREVCVYKIPPRTTSGGYKCGEWLQSDKIWTGRLRVVSCKDRCEIRLEDPNSGELFAACFVQ--PGQRENSVETVLDSSRYFVLKIEDGTGKHAFIGLGFNERNEAFDFNVALSDHEKYVRRELEKESGEMSESDGHIDIHPAVNHRLKEGETIRINVKPKPTXXXXXXXXXXXXXXXXXXXXXXXXXLAPPPSGMGKI 709
            +E  L+V  EV +YKIPPR ++ GY+ G+W   +  WTGR+R+V+      ++LED  SG LFA C +   PG    ++E V DSSRYFV++++D  G+ AF+GLGF +R+++FD NVAL DH K+V+ + E+   E +E    +D+        KEGETI+IN++                             L PPP G+GKI
Sbjct:    3 YESVLIVKPEVFIYKIPPRASNRGYRAGDWNLKEPTWTGRMRLVAKGTAVVLKLEDKTSGALFANCPIDTYPGV---AIEAVSDSSRYFVIRVQDDNGRSAFLGLGFGDRSDSFDLNVALQDHFKWVKNQ-EQIEKEKTEPKQELDL------GFKEGETIKINMR-------ITKKDGSEGSSRTGKNKGSSGVLPPPPGGLGKI 191
The following BLAST results are available for this feature:
BLAST of DY258051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
NECAP_DROME7.844e-3338.83NECAP-like protein CG9132 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC01ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258051 ID=DY258051; Name=DY258051; organism=Citrus clementina; type=EST; length=977bp
GATTGTTCTTCAATTCAGTTAAGTCACCTCAAATTCACTCGCATTTCTTC
TTCATTTCCCAAACAAAACGACCATGTCGTTCGACGACGAAGAATCGTTC
GAGCACACGCTCCTTGTCGTCCGCGAAGTCTGCGTTTACAAAATCCCCCC
GCGTACAACCTCTGGCGGCTACAAATGCGGCGAATGGCTGCAGTCCGACA
AGATCTGGACGGGCCGCCTCCGGGTCGTATCCTGTAAGGACCGGTGCGAG
ATCCGGTTAGAGGATCCCAACTCCGGTGAGCTCTTCGCAGCTTGTTTCGT
TCAACCCGGCCAGCGTGAGAACTCTGTGGAGACCGTCCTCGACTCGTCCC
GATATTTCGTGCTCAAGATCGAGGACGGTACAGGAAAACACGCGTTTATT
GGATTAGGCTTTAATGAGAGAAATGAAGCGTTTGATTTCAACGTCGCTTT
GTCGGATCACGAGAAATACGTGAGACGAGAACTCGAGAAGGAGAGTGGCG
AGATGAGTGAGAGCGATGGTCATATCGATATACATCCCGCAGTTAATCAT
AGATTAAAGGAAGGAGAAACGATCCGGATCAATGTGAAGCCCAAACCGAC
TAGTGGAACTGGCATGCTTTCAGCTGCAGGGCTGTCTGGGGCGGTTTCAG
TTTCGGCAAAGGCTAAAACGGTGGGGCTTGCCCCACCACCTAGTGGAATG
GGAAAAATAAGGGCACCTCCTCCGCCGCCACCTAATGATCCTGCTGCTGC
TAGGATCAACTCAGCTAGTCATAATAATGGTGTCAGGGCACCGAAGGAAA
CCACAAGGCATTCTACTACTGATCCTTCTTCAGACCTTTCCCAAATTGAG
AGGAATTTTCCTACATCAGCCACGAGTGGATCTAGTAAGACGCCTGCTTC
AGGATGGGCGGCTTTCTAAGTGTGTGACTATTTTTTTTTGTTTGTATGAG
ATGCTTGTTTGATGTTTTTTGTTCTAG
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