DY258054

Overview
NameDY258054
Unique NameDY258054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9905 contig Ccv1_Contig9905:4..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEAB (Pyridoxamine kinase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pdxY PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.591e-16
Identity = 67/220 (30.45%), Postives = 103/220 (46.82%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKF 690
            +L+GY+GS +    IL VV +++  NP  +Y+CDPVMG   K   V  E+     E+   VA  L PNQ E +     +  S AD  E  + L A GP  +++  +N  G       + L+ + Q    Q P    +  P+ P    G GDL + L L       D+L  A E A +++  +L  T              S E+ L+++QD I +P+V+F
Sbjct:   81 VLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWHLQRP---LLAFPRQP---VGVGDLASGLFLS-RLLLGDDLRNAFEFAGAAVHEVLLET----------QACGSYELELVRAQDRIAHPRVRF 283          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEA8 (Pyridoxamine kinase OS=Pseudomonas aeruginosa (strain LESB58) GN=pdxY PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.126e-16
Identity = 66/222 (29.73%), Postives = 104/222 (46.85%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKS 696
            +L+GY+GS +    IL VV +++  NP  +Y+CDPVMG   K   V  E+     E+   VA  L PNQ E +     +  S AD  E  + L A GP  +++  +N  G       + L+ + Q    Q P    +  P+ P    G GDL + L L       D+L  A E   +++  +L  T              S E+ L+++QD I +P++KF++
Sbjct:   81 VLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWHLQRP---LLAFPRQP---VGVGDLASGLFLS-RLLVGDDLRNAFEFTGAAVHEVLLET----------QACGSYELELVRAQDRIAHPRLKFEA 285          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEE4 (Pyridoxamine kinase OS=Pseudomonas entomophila (strain L48) GN=pdxY PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.001e-16
Identity = 65/223 (29.15%), Postives = 105/223 (47.09%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDL-----MTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEK 702
            +L+GY+GS      IL  V +++++NP  +Y+CDPVMG   K   VP+E+     E+ V  A +L PNQ E +   G R  S  D     + L   GP  V++  +N  G            G+     +  +   P    G GDL     M  LLLG S+        A E A +++  +L  T             +S E++L+++QD I +P+V+F++++
Sbjct:   81 VLSGYLGSAEQGRAILAGVARIKAVNPKALYLCDPVMGHAEKGCIVPAEVSEFLLEEAVAKADILCPNQLELDSFCGRRAESLEDCVGMARGLLERGPRIVLVKHLNYPGRADDAFEMLLVTGEESWHLRRPLLAFPRQPVGVGDLTSGLFMARLLLGDSDVQ------AFEFAAAAVHEVLLET----------QACASYELQLVRAQDRIAHPRVRFEAQR 287          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEA7 (Pyridoxamine kinase OS=Pseudomonas aeruginosa (strain PA7) GN=pdxY PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.001e-16
Identity = 66/220 (30.00%), Postives = 103/220 (46.82%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKF 690
            +L+GY+GS +    IL+VV +++  NP  +Y+CDPVMG   K   V  E+     E+   VA  L PNQ E +     +  S AD  E  + L A GP  +++  +N  G       + L+ + Q    Q P    +  P+ P    G GDL + L L       D+L  A E   +++  +L  T              S E+ L+++QD I +P+V+F
Sbjct:   81 VLSGYLGSAAQGRAILEVVGRIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQVWHLQRP---LLAFPRQP---VGVGDLTSGLFLS-RLLLGDDLRNAFEFTSAAVHEVLLET----------QARGSYELELVRAQDRIAHPRVRF 283          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_HAEIN (Pyridoxamine kinase OS=Haemophilus influenzae GN=pdxY PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 8.001e-16
Identity = 68/231 (29.44%), Postives = 109/231 (47.19%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELV-SVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP--------KIPAYF-----TGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEK 702
            LL+GY+GS   ++ IL  +E+++  NPN +Y+CDPVM    K+ V +  V     EK +PVA ++TPN  E  QLT F I +  D  +A   L A G  KV++  +   G +             P+ F+I++           P Y       G GDL+    L  +N      D+ A  A+++  A + +T  +           S E++ I ++ +I NP   +K+EK
Sbjct:   78 LLSGYLGSAEQVDQILFALEQIKLRNPNALYLCDPVMPHPKKICVVANGVREALIEKAIPVADIMTPNLHELRQLTEFPINTFDDVLKAVNALIAKGVKKVLVKHLGSAGKI-----------NDPDTFEIIMATPEGVWHLSRPLYQFNFEPVGVGDLIAGTFL--ANLLNGKSDVEAFEAMNNEVAGVMKTTFEL---------GSYELQTIAARFEILNPSSNYKAEK 286          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEAE (Pyridoxamine kinase OS=Pseudomonas aeruginosa GN=pdxY PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.045e-15
Identity = 66/220 (30.00%), Postives = 102/220 (46.36%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKF 690
            +L+GY+GS +    IL VV +++  NP  +Y+CDPVMG   K   V  E+     E+   VA  L PNQ E +     +  S AD  E  + L A GP  +++  +N  G       + L+ + Q    Q P    +  P+ P    G GDL + L L       D+L  A E   +++  +L  T              S E+ L+++QD I +P+V+F
Sbjct:   81 VLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWHLQRP---LLAFPRQP---VGVGDLASGLFLS-RLLLGDDLRNAFEFTGAAVHEVLLET----------QACGSYELELVRAQDRIAHPRVRF 283          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_HAEIE (Pyridoxamine kinase OS=Haemophilus influenzae (strain PittEE) GN=pdxY PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.782e-15
Identity = 67/231 (29.00%), Postives = 108/231 (46.75%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP--------KIPAYF-----TGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSEK 702
            LL+GY+GS   ++ IL  +E+++  NPN +Y+CDPVM    K   V + +     EK +PVA ++TPN  E  QLT F I +  D  +A   L A G  KV++  +   G +             P+ F+I++           P Y       G GDL+    L  +N      D+ A  A+++  A + +T  +           S E++ I ++ +I NP   +K+EK
Sbjct:   78 LLSGYLGSAEQVDQILFALEQIKLRNPNALYLCDPVMPHPKKSCVVANGVCEALIEKAIPVADIMTPNLHELRQLTEFPINTFDDVLKAVNALIAKGVKKVLVKHLGSAGKI-----------NDPDTFEIIMATPEGVWHLSRPLYQFNFEPVGVGDLIAGTFL--ANLLNGKSDVEAFEAMNNEVAGVMKTTFEL---------GSYELQTIAARFEILNPSSNYKAEK 286          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSESM (Pyridoxamine kinase OS=Pseudomonas syringae pv. tomato GN=pdxY PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.040e-15
Identity = 67/238 (28.15%), Postives = 111/238 (46.64%), Query Frame = 1
Query:    7 LIEGLEA-NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKS 696
            LI+G+ A   L     +L+GY+GS +    IL  V ++++ NP  +Y+CDPVMG   K   VP ++     E+   VA  + PNQ E +  +G +  S  D     + L A GP  +V+  ++  G       + L+ +      + P    +  P+ P    G GDL + L L       D+L  A E   +++  +L  T              S E+ L+++QD I +P+VKF++
Sbjct:   65 LIDGIAAIGELGNCDAVLSGYLGSAAQGRAILSGVARIKAANPKALYLCDPVMGHPEKGCIVPPQVSDFLLEEAAAVADFMCPNQLELDSFSGRKPESLPDCLAMARALLARGPKAIVVKHLDYPGKAADGFEMLLVTAEASWHLRRP---LLAFPRQP---VGVGDLTSGLFLS-RILLGDDLVAAFEFTAAAVHEVLLET----------QACGSYELELVRAQDRIAHPRVKFEA 285          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEPG (Pyridoxamine kinase OS=Pseudomonas putida (strain GB-1) GN=pdxY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 67/246 (27.24%), Postives = 112/246 (45.53%), Query Frame = 1
Query:    7 LIEGLE-ANNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNLFLIGSHQKEKGQSPEQFKIVIP-------------KIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKSE 699
            L+EG+     L +   +L+GY+GS      IL  VE+++++NP  +Y+CDPVMG   K   VP E+ +   E+    A +L PNQ E +   G R  S  D     + L   GP  VV+              H    G++ +QF++++                P    G GDL + L L       D+   A E   +++  +L  T             +S E++L+++QD I +P+V+F+++
Sbjct:   65 LVEGISNIGELGHCDAVLSGYLGSAEQGRAILAGVERIKAVNPKALYLCDPVMGHPEKGCIVPPEVSAFLLEEAAARADILCPNQLELDSFCGRRAQSLEDCVNMARSLLKRGPQVVVV-------------KHLAYPGRAEDQFEMLLVTAEHSWHLRRPLLAFPRQPVGVGDLTSGLFLA-RVMLGDSWVQAFEFTAAAVHEVLLET----------QACASYELQLVRAQDRIAHPRVRFEAQ 286          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_PSEFS (Pyridoxamine kinase OS=Pseudomonas fluorescens (strain SBW25) GN=pdxY PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.971e-15
Identity = 69/235 (29.36%), Postives = 109/235 (46.38%), Query Frame = 1
Query:    7 LIEGLEA-NNLLYYTHLLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDGNL---FLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRTVNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKFKS 696
            L+EG+ A   L     +L+GY+GS      IL  V ++++INP  +Y+CDPVMG   K   VP E+     ++   +A  L PNQ E +   G +  S  D     K L A GP  V++  ++  G L   F I     E      +  +   + P    G GDL + L L       D+L  A E   +++  +L  T             +S E+ L+++QD I +P+V+F++
Sbjct:   65 LVEGIAAIGELGNCDAILSGYLGSADQGRAILTGVARIKAINPKALYLCDPVMGHPEKGCIVPQEVSDFLLDEAAAMADFLCPNQLELDSFAGRKPQSLFDCLAMAKALLARGPKAVLVKHLDYPGKLPDGFEILLVTAEGSWHLRRPLLAFARQP---VGVGDLTSGLFLA-RVLLGDSLLAAFEFTAAAVHEVLLET----------QACASYELELVRAQDRIAHPRVRFEA 285          
The following BLAST results are available for this feature:
BLAST of DY258054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PDXY_PSEAB3.591e-1630.45Pyridoxamine kinase OS=Pseudomonas aeruginosa (str... [more]
PDXY_PSEA86.126e-1629.73Pyridoxamine kinase OS=Pseudomonas aeruginosa (str... [more]
PDXY_PSEE48.001e-1629.15Pyridoxamine kinase OS=Pseudomonas entomophila (st... [more]
PDXY_PSEA78.001e-1630.00Pyridoxamine kinase OS=Pseudomonas aeruginosa (str... [more]
PDXY_HAEIN8.001e-1629.44Pyridoxamine kinase OS=Haemophilus influenzae GN=p... [more]
PDXY_PSEAE1.045e-1530.00Pyridoxamine kinase OS=Pseudomonas aeruginosa GN=p... [more]
PDXY_HAEIE1.782e-1529.00Pyridoxamine kinase OS=Haemophilus influenzae (str... [more]
PDXY_PSESM3.040e-1528.15Pyridoxamine kinase OS=Pseudomonas syringae pv. to... [more]
PDXY_PSEPG3.971e-1527.24Pyridoxamine kinase OS=Pseudomonas putida (strain ... [more]
PDXY_PSEFS3.971e-1529.36Pyridoxamine kinase OS=Pseudomonas fluorescens (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258054 ID=DY258054; Name=DY258054; organism=Citrus clementina; type=EST; length=925bp
TGCGATTTAATAGAAGGACTGGAAGCCAATAATCTATTGTACTATACTCA
TTTATTAACAGGTTATATTGGTTCTGTTTCTTTTCTGAACACGATACTGC
AAGTTGTTGAAAAGCTTCGCTCTATAAACCCAAATCTGATATACGTTTGT
GATCCAGTGATGGGTGACGAGGGAAAGCTCTATGTTCCTTCCGAGCTAGT
ATCAGTATACCGTGAGAAGGTTGTTCCAGTGGCCTCAATGTTGACCCCTA
ATCAGTTTGAAGCAGAACAGTTGACTGGTTTCAGGATTGGGAGTGAAGCA
GATGGGAGGGAAGCTTGTAAGATTCTTCATGCTGCTGGACCTGCAAAGGT
TGTGATCACAAGCATAAATATAGATGGCAATCTTTTCCTGATTGGCAGTC
ATCAGAAGGAAAAGGGTCAGTCTCCGGAGCAGTTCAAGATTGTGATACCC
AAAATTCCTGCATATTTTACAGGAACTGGTGATCTAATGACTGCACTCCT
GCTTGGATGGAGTAATAAATATAGGGACAACCTTGACATTGCTGCTGAGC
TTGCAGTATCAAGTTTGCAGGCTCTTTTACAGAGGACGGTGAATGACTAC
GTTACCGCTGGATTCGATCCCCAATCAAGTAGTTTGGAGATCCGATTGAT
CCAGAGCCAGGATGACATTCGGAACCCACAAGTGAAATTCAAGTCTGAAA
AATACAACTGAATGGATGATATTTATACTTATTGAAACAGAATCAATTTC
TATAGGGTGCATTTGTACTATTTATTTTTGACAGTTTTGGTTTATTTAAC
GCAAAAATGTTACTTTATATGTTCTTTGTCACAATAAAGAGCCGAGAGCA
GCGATGTAACGCTGGTTGCTTGGTACTATGGCGTGGAGGAAAAATCCGAT
GAAATTGGAAATTTTANTTTACCTA
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