DY258054

Overview
NameDY258054
Unique NameDY258054
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length925
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9905 contig Ccv1_Contig9905:4..928. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_VIBHB (Pyridoxamine kinase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=pdxY PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.367e-12
Identity = 53/167 (31.74%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSI----NIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTA-----LLLGWSNK 519
            +LTGY GS      +   V K++  NP  +YVCDPVMG  D+G +  P  +      +++P+A ++ PNQFE  Q     I +  D   AC+   A GP  V++  +    +   N+ L  S      + P        K P    G GDL++A     LL GW+ K
Sbjct:   79 VLTGYQGSAEQCLAVEDTVTKVKQANPEALYVCDPVMGAPDKGCIVAPG-IAENLLNRLMPMADVIVPNQFELSQFAEMEIHTLDDAINACQRALAKGPKVVLVKHLYCLSDDSFNMLLATSEGTYLAKRPH---FEFAKAP---VGAGDLISAIFTAGLLKGWTPK 238          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_BURP8 (Pyridoxamine kinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=pdxY PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 57/235 (24.26%), Postives = 106/235 (45.11%), Query Frame = 1
Query:    7 LIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVI------TSINIDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRT---VNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQ 681
            L+EG+ A  +L     +L+GY+G+      ++++V  +++ NP+ +Y CDPVMG      V   +       +  V+ ++ PN  E ++L G  I +  +   AC+ L   GP  V++       S+    N+ ++   +   GQ P      +        G GD+ +A+             +A  L   S+++  + T   VN  V A +D  +   E+ ++ +QDDI  P+
Sbjct:   62 LVEGIGAIGMLPRCDAVLSGYLGTPEQAQAVIEIVRAVKAANPHALYFCDPVMGTATGYRVEPGIQEFLVRTMPEVSDVMCPNHSELQRLVGREIETVEEAVAACRELMKRGPKMVLVKHLLDRNSLADRFNMLVVTGREAWMGQRP------LYPFARQPVGVGDMTSAVF------------VARTLLGDSVRSAFEHTLAAVNAVVRATWD--AGRYELEIVAAQDDIARPR 276          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_BURMA (Pyridoxamine kinase OS=Burkholderia mallei GN=pdxY PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.154e-12
Identity = 58/238 (24.37%), Postives = 107/238 (44.96%), Query Frame = 1
Query:    7 LIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRT---VNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKF 690
            L++G+ A   L     +L+G++GS +     +++V  +++ NPN  Y CDP MG  G +     +      ++  +A  + PN  E ++L G RI + A+   AC+ +    P  +++  ++         N+ ++   +   GQ P      +   P +  G GDL +A+             +A  L   S++A  + T   V+  V A +D +   LE  L+ +QD+I  P   F
Sbjct:   62 LVDGIAAIGALKRCDAVLSGFLGSPAQARAAVEIVRTVKATNPNAWYFCDPAMGQTGGIRPEPGVEEFIVAELPELADGMAPNHSELQKLAGQRIETVAEAVAACRSIIRRSPQVILVKHLHDRNSPADRFNMLVVTETEAWIGQRP------LYAFPRHPVGVGDLTSAIF------------VARRLRGDSVRAAFEHTLAAVHAVVKATYDARRYELE--LVAAQDEIARPSEWF 279          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_VIBVY (Pyridoxamine kinase OS=Vibrio vulnificus (strain YJ016) GN=pdxY PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.561e-11
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN-IDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTA-----LLLGWSNK 519
            +LTGY GS      + + V K++  NP+ +YVCDPVMG  D+G +  P  +      +++P+A ++ PNQFE  Q     I +  D   AC+   A GP  V++  +  +    F +    +E     ++      K P    G GDL++A     LL GW+ K
Sbjct:   79 VLTGYQGSAEQCLAVEETVTKVKQANPDALYVCDPVMGAPDKGCIVAPG-IAENLLNRLMPMADVIVPNQFELSQFAEMEIHTLDDAIIACQRALAKGPKVVLVKHLYCLSDESFNMLLATQEGTYLAKRPHFEFAKAP---VGAGDLISAIFTAGLLKGWTPK 238          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_VIBVU (Pyridoxamine kinase OS=Vibrio vulnificus GN=pdxY PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.561e-11
Identity = 51/164 (31.10%), Postives = 80/164 (48.78%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMG--DEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSIN-IDGNLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTA-----LLLGWSNK 519
            +LTGY GS      + + V K++  NP+ +YVCDPVMG  D+G +  P  +      +++P+A ++ PNQFE  Q     I +  D   AC+   A GP  V++  +  +    F +    +E     ++      K P    G GDL++A     LL GW+ K
Sbjct:   79 VLTGYQGSAEQCLAVEETVTKVKQANPDALYVCDPVMGAPDKGCIVAPG-IAENLLNRLMPMADVIVPNQFELSQFAEMEIHTLDDAIIACQRALAKGPKVVLVKHLYCLSDESFNMLLATQEGTYLAKRPHFEFAKAP---VGAGDLISAIFTAGLLKGWTPK 238          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXY_BURXL (Pyridoxamine kinase OS=Burkholderia xenovorans (strain LB400) GN=pdxY PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.039e-11
Identity = 62/240 (25.83%), Postives = 108/240 (45.00%), Query Frame = 1
Query:    4 DLIEGLEANNLLYYTH-LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGKLYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITSINIDG-------NLFLIGSHQKEKGQSPEQFKIVIPKIPAYFTGTGDLMTALLLGWSNKYRDNLDIAAELAVSSLQALLQRT---VNDYVTAGFDPQSSSLEIRLIQSQDDIRNPQVKF 690
            +L++G+ A  +L     +L+GY+G+     ++L++V+ +++ NP   Y CDPVMG      V   +       +  VA  + PN  E ++L G  I +  +   AC+ L A GP K+V+    +D        N+ ++   +   GQ P      +        G GDL +A+             +A  L   S++A  + T   VN  V A +  Q+   E+ L+ +Q +I  P+  F
Sbjct:   62 ELVDGIGAIGMLPRCDAVLSGYLGTPEQAQSVLEIVKAVKAANPRAWYFCDPVMGAVSGCKVEPGIQEFLVRTMPGVADAMAPNHTELQRLVGREIETLEEAVTACRELIARGP-KLVLVKHLLDRNSPADRFNMLVVTEREAWMGQRP------LYPFARQPVGVGDLTSAVF------------VARTLLGDSIRAAFEHTLAAVNAVVKATW--QAGRYELELVAAQSEIAQPREWF 280          
BLAST of DY258054 vs. ExPASy Swiss-Prot
Match: PDXK_BORA1 (Pyridoxine kinase OS=Bordetella avium (strain 197N) GN=pdxK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.663e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   52 LLTGYIGSVSFLNTILQVVEKLRSINPNLIYVCDPVMGDEGK-LYVPSELVSVYREKVVPVASMLTPNQFEAEQLTGFRIGSEADGREACKILHAAGPAKVVITS 363
            +L GY+GS      + + + ++R ++P ++ + DPVMGD+   LYV   L    RE +VP A  LTPN FE   LTG  +G       A + L A G   VV+TS
Sbjct:   92 ILVGYLGSAEQARVLGRWIARIREVHPQVLVIVDPVMGDDDHGLYVTEGLAEASRECLVPQAHGLTPNSFELGLLTGCEVGRVDQAVAAARRLLAQGLRWVVVTS 196          
The following BLAST results are available for this feature:
BLAST of DY258054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PDXY_VIBHB5.367e-1231.74Pyridoxamine kinase OS=Vibrio harveyi (strain ATCC... [more]
PDXY_BURP87.009e-1224.26Pyridoxamine kinase OS=Burkholderia phymatum (stra... [more]
PDXY_BURMA9.154e-1224.37Pyridoxamine kinase OS=Burkholderia mallei GN=pdxY... [more]
PDXY_VIBVY1.561e-1131.10Pyridoxamine kinase OS=Vibrio vulnificus (strain Y... [more]
PDXY_VIBVU1.561e-1131.10Pyridoxamine kinase OS=Vibrio vulnificus GN=pdxY P... [more]
PDXY_BURXL2.039e-1125.83Pyridoxamine kinase OS=Burkholderia xenovorans (st... [more]
PDXK_BORA12.663e-1138.10Pyridoxine kinase OS=Bordetella avium (strain 197N... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DC09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258054 ID=DY258054; Name=DY258054; organism=Citrus clementina; type=EST; length=925bp
TGCGATTTAATAGAAGGACTGGAAGCCAATAATCTATTGTACTATACTCA
TTTATTAACAGGTTATATTGGTTCTGTTTCTTTTCTGAACACGATACTGC
AAGTTGTTGAAAAGCTTCGCTCTATAAACCCAAATCTGATATACGTTTGT
GATCCAGTGATGGGTGACGAGGGAAAGCTCTATGTTCCTTCCGAGCTAGT
ATCAGTATACCGTGAGAAGGTTGTTCCAGTGGCCTCAATGTTGACCCCTA
ATCAGTTTGAAGCAGAACAGTTGACTGGTTTCAGGATTGGGAGTGAAGCA
GATGGGAGGGAAGCTTGTAAGATTCTTCATGCTGCTGGACCTGCAAAGGT
TGTGATCACAAGCATAAATATAGATGGCAATCTTTTCCTGATTGGCAGTC
ATCAGAAGGAAAAGGGTCAGTCTCCGGAGCAGTTCAAGATTGTGATACCC
AAAATTCCTGCATATTTTACAGGAACTGGTGATCTAATGACTGCACTCCT
GCTTGGATGGAGTAATAAATATAGGGACAACCTTGACATTGCTGCTGAGC
TTGCAGTATCAAGTTTGCAGGCTCTTTTACAGAGGACGGTGAATGACTAC
GTTACCGCTGGATTCGATCCCCAATCAAGTAGTTTGGAGATCCGATTGAT
CCAGAGCCAGGATGACATTCGGAACCCACAAGTGAAATTCAAGTCTGAAA
AATACAACTGAATGGATGATATTTATACTTATTGAAACAGAATCAATTTC
TATAGGGTGCATTTGTACTATTTATTTTTGACAGTTTTGGTTTATTTAAC
GCAAAAATGTTACTTTATATGTTCTTTGTCACAATAAAGAGCCGAGAGCA
GCGATGTAACGCTGGTTGCTTGGTACTATGGCGTGGAGGAAAAATCCGAT
GAAATTGGAAATTTTANTTTACCTA
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