DY258060

Overview
NameDY258060
Unique NameDY258060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length803
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_CHRSD (S-adenosylmethionine synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metK PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.849e-56
Identity = 117/233 (50.21%), Postives = 151/233 (64.81%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            E  LFTSESV+EGHPDK+ DQISDAVLDA + +D +++VACET  KT + +V GEITT A VD E +VR     IG+ S DVG D + C VL  I +QS DIAQGV      +PED GAGDQG MFGYAT+ET  +MP     + +L  R  E+RK+    WLRPD K+Q+T  Y   +    P  V  V++STQHD  +  DE+   +K  +I+ VIP ++L E T +H+NP
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIARDKQARVACETMVKTGVAIVAGEITTSAWVDLEDLVRRVINDIGYTSSDVGFDGNTCGVLNLIGKQSVDIAQGVD---RSKPEDQGAGDQGLMFGYATNETDSYMPAPIHYSHRLVERQAELRKHGLLPWLRPDAKSQLTFRY---DAQGKPCAVDAVVLSTQHDPDIDQDELREMVKREIIEEVIPAEWLTETTKYHINP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_XYLFT (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH+NP
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_XYLFM (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M12) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH+NP
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_XYLFA (S-adenosylmethionine synthetase OS=Xylella fastidiosa GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH+NP
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSPLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_XYLF2 (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M23) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 115/236 (48.73%), Postives = 155/236 (65.68%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK--NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M ++LFTSESV+EGHPDK+ DQISDAVLDA L QDP ++VACET  KT + ++ GEITT A VD E + R     IG+ S DVG D   C VL  I +QSPDI QGV     K+ E+ GAGDQG MFGYAT+ET  +MP +  ++ +L  +  ++RK  NS   WLRPD K Q+T+ Y +     V   +  V++STQHD  +   ++   ++E ++KPV+P K+L + T FH+NP
Sbjct:    1 MSSYLFTSESVSEGHPDKVADQISDAVLDAILVQDPRARVACETMVKTGVAIIAGEITTSAWVDLEALTRKVIVDIGYNSSDVGFDGATCGVLNLIGKQSPDINQGVD---RKKAEEQGAGDQGLMFGYATNETDSYMPAAIHISHRLVEQQAKIRKKSNSLLPWLRPDAKAQITLRYEDG----VASAIDAVVLSTQHDPGIKQKDLVEAVREEILKPVLPSKWLHKGTKFHINP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_SYNS3 (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain CC9311) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 121/229 (52.84%), Postives = 147/229 (64.19%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGV---HGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKP 750
            M  ++FTSESV EGHPDK+CDQ+SDAVLDA L QD  S+VACET   T + M+ GE+T+KA+VD+  +VRD  R IG+      G DA  C VLV ++QQSPDIAQGV     H     + +GAGDQG MFGYA +ET E MPL   LA +L  RL EVR N T  +L PDGKTQV+V Y ND     PV + T+LISTQH        DE    + I+ DL  HV+ P
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDALLAQDSTSRVACETVVNTGLCMITGEVTSKAQVDFIHLVRDVIRDIGYSGARAGGFDATSCAVLVALDQQSPDIAQGVDEADDHAGDPLDKVGAGDQGIMFGYACNETPELMPLPISLAHRLARRLAEVRHNGTLDYLLPDGKTQVSVVYENDK----PVEIDTILISTQHTAEVTGLTDEQEVRNRISEDLWTHVVLP 225          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_NEIM0 (S-adenosylmethionine synthetase OS=Neisseria meningitidis serogroup C (strain 053442) GN=metK PE=3 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 3.721e-56
Identity = 115/238 (48.32%), Postives = 160/238 (67.23%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI----GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M  +LFTSESV+EGHPDK+ DQ+SDA+LDA L QDP+++VA ET   T + ++ GEITT A+VDY K+ R+T + IG+ S ++G DA+ C V V  +QQSPDIAQGV+       E I    GAGDQG MFGYA DET   MP +   + +L  R +E+RK+    WLRPD K Q+TV Y ++ G +   R+ TV++STQHD  +  +E+   + E +IKPV+P + L ++T + +NP
Sbjct:    1 MSEYLFTSESVSEGHPDKVADQVSDAILDAILAQDPKARVAAETLVNTGLCVLAGEITTTAQVDYIKVARETIKRIGYNSSELGFDANGCAVGVYYDQQSPDIAQGVN-----EGEGIDLNQGAGDQGLMFGYACDETPTLMPFAIYYSHRLMQRQSELRKDGRLPWLRPDAKAQLTVVYDSETGKV--KRIDTVVLSTQHDPEIGYEELKNAVIEQIIKPVLPSELLTDETKYLINP 231          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_PROMT (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain NATL2A) GN=metK PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.860e-56
Identity = 123/249 (49.40%), Postives = 157/249 (63.05%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS-DDVGLDADHCKVLVNIEQQSPDIAQGVH---GHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETV--------TNDEIAADLKEHVIKPV---IPEKYLDEKTIFHLNP 801
            M  ++FTSESV EGHPDK+CDQ+SDAVLDACL +DP S+VACE    T + ++ GEIT+KA+VD+ K+VR+  ++IG+ S  D G DA+ C VLV ++QQS DIAQGV+    H T   + +GAGDQG MFG+A DET E MPL   LA +L  RL  VR      +L PDGKTQV+V Y N     VP  + T+LISTQH   V            IA DL + V++P    +P K     T F +NP
Sbjct:    1 MSRYVFTSESVTEGHPDKICDQVSDAVLDACLSEDPTSRVACEAVVNTGLCLITGEITSKAEVDFNKLVREVIKNIGYRSASDGGFDANSCAVLVALDQQSSDIAQGVNEAEDHSTDPLDQVGAGDQGIMFGFACDETPELMPLPISLAHRLARRLALVRHQQLIDYLLPDGKTQVSVSYENG----VPCSIDTILISTQHKSEVDGITLEEEIQKRIAKDLWKFVVEPATEDLPLKPAKGSTRFLVNP 245          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_HAEIN (S-adenosylmethionine synthetase OS=Haemophilus influenzae GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.347e-56
Identity = 117/234 (50.00%), Postives = 155/234 (66.24%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M ++LFTSESV+EGHPDK+ DQISDAVLD  L+QDP+++VACET  KT M +V GEITT A VD E + R     IG+   ++G D   C VL  I +QS DI QGV     + P D GAGDQG MFGYAT+ET   MP +   A +L  + +EVRK+   +WLRPD K+QVT++ Y DN     V V  V++STQH E V+  ++   + E +IKPV+P ++L ++T F +NP
Sbjct:    1 MSSYLFTSESVSEGHPDKIADQISDAVLDEILKQDPKARVACETYVKTGMALVGGEITTSAWVDIENLTRKVICDIGYEHSEMGFDGHSCAVLNAIGKQSADINQGVD---RENPLDQGAGDQGIMFGYATNETDVLMPAAITYAHRLMEKQSEVRKSGKLAWLRPDAKSQVTLK-YEDNKI---VGVDAVVLSTQHSEEVSQKDLHEGVMEEIIKPVLPSEWLSKETKFFINP 227          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_ALHEH (S-adenosylmethionine synthetase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metK PE=3 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 6.347e-56
Identity = 111/234 (47.44%), Postives = 154/234 (65.81%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            M  +LFTSESV+EGHPDK+ DQISDAVLDA L +DP  ++ACET  KT ++++ GE+TT A +DYE + R+T + IG+   ++G D + C V+  + +QS DIAQGV       PE+ GAGDQG MFGYA++ET   MP     A +L  R  EVR N    WLRPD K+QVT+ Y +      PV V TV++STQH   +T  ++   + E +IKPV+PE+++  +T + +NP
Sbjct:    1 MSEYLFTSESVSEGHPDKMADQISDAVLDAILAEDPRGRIACETMIKTGIIILGGEVTTSANIDYEAVARETVKRIGYKHHEMGFDGETCGVINILGKQSVDIAQGVD---RDHPEEQGAGDQGLMFGYASNETDVLMPAPITYAHRLVQRQAEVRCNGQLPWLRPDAKSQVTLRYVDGR----PVAVDTVVLSTQHAPDLTQAQVHEAVIEEIIKPVLPEQWITGETRYLVNP 227          
The following BLAST results are available for this feature:
BLAST of DY258060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CHRSD2.849e-5650.21S-adenosylmethionine synthetase OS=Chromohalobacte... [more]
METK_XYLFT3.721e-5648.73S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFM3.721e-5648.73S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLFA3.721e-5648.73S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_XYLF23.721e-5648.73S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_SYNS33.721e-5652.84S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_NEIM03.721e-5648.32S-adenosylmethionine synthetase OS=Neisseria menin... [more]
METK_PROMT4.860e-5649.40S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_HAEIN6.347e-5650.00S-adenosylmethionine synthetase OS=Haemophilus inf... [more]
METK_ALHEH6.347e-5647.44S-adenosylmethionine synthetase OS=Alkalilimnicola... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258060 ID=DY258060; Name=DY258060; organism=Citrus clementina; type=EST; length=803bp
GGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGT
CTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGA
TGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGAC
AAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCA
GGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGG
TCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAG
ATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGG
TCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCC
CGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGAC
ATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGAC
CTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTC
GTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGAT
GGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCATGGT
CCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTG
TCACAAATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCT
GTCATCCCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCC
ATC
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