DY258060

Overview
NameDY258060
Unique NameDY258060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length803
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_CLAMS (S-adenosylmethionine synthetase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=metK PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 115/223 (51.57%), Postives = 145/223 (65.02%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI--------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 756
            LFTSESV EGHPDK+CDQISD++LDA L QDP S+ A ET   T +V V GE+TT   VD  +IVRD  R IG+ S +VG D  +C V V+I  QSPDIAQGV   +  R            GAGDQG MFGYA+ +T  FMPL   LA +L  RL  VR +   S+LRPDGKTQVT+ Y      +VP  V TV++STQH   V+ +++  +++EHVI+PV+
Sbjct:    6 LFTSESVTEGHPDKICDQISDSILDALLTQDPSSRAAVETLVTTGLVHVAGEVTTSGYVDIPQIVRDRIRDIGYDSSEVGFDGSNCGVTVSIGAQSPDIAQGVDRSYESRSGSASTDAHDLQGAGDQGLMFGYASRDTPVFMPLPIYLAHRLAERLAAVRHSGELSYLRPDGKTQVTIGY----EGLVPRTVDTVVLSTQHGPQVSQEDLRREVEEHVIRPVL 224          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_BORPD (S-adenosylmethionine synthetase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=metK PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 9.166e-55
Identity = 117/234 (50.00%), Postives = 150/234 (64.10%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP ++VA ET   T +V++ GEITT A VDY ++ RDT R IG+ + D G+D   C VLV  ++QSPDIAQGV     ++ ED    GAGDQG MFGYA DET + MP     A +L  R +E+RK+    WLRPD K+QVT  Y +      PV V TV++STQH   ++   I   + E +IKP  PE  +  +T F +NP
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRRIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGV----DRKSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PVEVDTVVLSTQHAPEISQSAIHEAVIEDIIKPSFPEGLITPRTKFLVNP 231          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_POLSQ (S-adenosylmethionine synthetase OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=metK PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.197e-54
Identity = 112/231 (48.48%), Postives = 155/231 (67.10%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            + FTSESV+EGHPDK+ DQISDA+LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DETSE MP+   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++   + E +IKPV+P+  +     F +NP
Sbjct:    5 YFFTSESVSEGHPDKVADQISDAILDAILAQDPTARVAAETLCNTGLVVLAGEITTHANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETSELMPMPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEEISLEKLREAVIEEIIKPVLPKHLIKGAINFLVNP 230          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_PROM0 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9301) GN=metK PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.563e-54
Identity = 122/249 (49.00%), Postives = 163/249 (65.46%), Query Frame = 1
Query:  100 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDV-GLDADHCKVLVNIEQQSPDIAQGVHGH---FTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHD---ETVTNDE-----IAADLKEHVIKPVIPEKYLD---EKTIFHLNP 801
            M  F+FTSESV EGHPDK+CDQISDAVLDA L +DPES+VACET   T + ++ GEIT+KAKVDY K+VR+  + IG+      G DA+ C VLV +++QSPDI+QGV+          ++ GAGDQG MFGYA DET E MPL   LA +L  +L +VR     ++L PDGKTQV+++Y       +PV ++T+LISTQH+   + VTN+E     I  DL ++V+ P   +  +     KT F +NP
Sbjct:    1 MSDFIFTSESVTEGHPDKICDQISDAVLDALLTEDPESRVACETVVNTGLCLLTGEITSKAKVDYIKLVRNVIKEIGYEGYRAGGFDANSCAVLVALDEQSPDISQGVNDADDINDDLEDNTGAGDQGIMFGYACDETPELMPLPISLAHRLAIQLAKVRHEEVLNYLLPDGKTQVSIDYEKG----LPVSINTILISTQHNSEIDGVTNEEEIRQRIKEDLWKNVVIPATEDLEIKPNISKTRFLVNP 245          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_MARAV (S-adenosylmethionine synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metK PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.563e-54
Identity = 115/230 (50.00%), Postives = 149/230 (64.78%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            +FTSESV+EGHPDKL DQISDAVLDA L  DP ++VACET  KT + +V GEITT A VD E +VR   + I + S +VG D D C V+  I +QS DIAQGV     ++PED GAGDQG MFGYA++ET   MP     + +L  R  E RK+    WLRPD K+QVT  Y  +NG +  V +  V++STQHD  VT  ++   + E ++K  +P + L + T FH+NP
Sbjct:    6 IFTSESVSEGHPDKLADQISDAVLDAILTDDPHARVACETMVKTGVAIVGGEITTSAWVDLEDLVRGVIKDIDYTSSEVGYDGDTCGVINIIGKQSVDIAQGVD---RQKPEDQGAGDQGLMFGYASNETDVLMPAPITFSHRLVQRQAEARKSGLLPWLRPDAKSQVTCRY--ENGKV--VGIDAVVLSTQHDPDVTQADLKEAVMELIVKHTLPAELLHKDTQFHINP 228          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_THET8 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 120/238 (50.42%), Postives = 150/238 (63.03%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR------PED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL-DEKTIFHLNP 801
            L TSESV EGHPDKL D+ISDA+LDA + QD +++VA ET   T +V V GEITT+  VD   +VR T R +G+     G DAD C VL  I++QSPDIA GV+  +  R      P D +GAGDQG MFGYATDET E MPL   LA +L  RL EVRK     +LRPDGK QVTV Y  D     P+ V TV++S QH   V  +++  DL   V++  IP +YL D +T + +NP
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKDGETEYLINP 239          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_THET2 (S-adenosylmethionine synthetase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=metK PE=3 SV=2)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 120/238 (50.42%), Postives = 150/238 (63.03%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKR------PED-IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYL-DEKTIFHLNP 801
            L TSESV EGHPDKL D+ISDA+LDA + QD +++VA ET   T +V V GEITT+  VD   +VR T R +G+     G DAD C VL  I++QSPDIA GV+  +  R      P D +GAGDQG MFGYATDET E MPL   LA +L  RL EVRK     +LRPDGK QVTV Y  D     P+ V TV++S QH   V  +++  DL   V++  IP +YL D +T + +NP
Sbjct:    6 LVTSESVTEGHPDKLADRISDAILDALIAQDKKARVAAETLVTTGLVFVAGEITTEGYVDIPNLVRKTVREVGYTRAKYGFDADTCAVLTAIDEQSPDIAGGVNLSYEWRVLKSTDPLDRVGAGDQGLMFGYATDETPELMPLPITLAHRLTMRLAEVRKTGLLPYLRPDGKAQVTVVYEGDK----PLYVKTVVVSAQHSPEVEQEQLREDLIREVVRQAIPPEYLKDGETEYLINP 239          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_MYXXD (S-adenosylmethionine synthetase OS=Myxococcus xanthus (strain DK 1622) GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 113/231 (48.92%), Postives = 148/231 (64.07%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            FLFTSESV EGHPDK+ DQISD VLDA + +DP+++VA ET  KT + +V GE+TT   VD  K+VR T   IG+    +G D + C V+V IE QS DIA+GV        +D GAGDQG MFG+A DET E MP     A  +  RL +VR+     W+RPDGK+QVTVEY +      P R+  V++STQH + V+N +I   ++E VI   +P+K +D KT F +NP
Sbjct:    5 FLFTSESVTEGHPDKIADQISDGVLDAIIAKDPQARVAVETLVKTGLAIVAGEVTTNCYVDIPKLVRSTICRIGYTDSSMGYDGNTCGVMVAIEGQSQDIARGV-----DNKKDQGAGDQGMMFGFACDETPELMPAPIHYAHAITRRLADVRRKQH-PWIRPDGKSQVTVEYRDGR----PARIDAVVVSTQHSDEVSNKKIQEAIREDVIAKALPKKLIDNKTKFFINP 225          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_HERAR (S-adenosylmethionine synthetase OS=Herminiimonas arsenicoxydans GN=metK PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.042e-54
Identity = 114/231 (49.35%), Postives = 155/231 (67.10%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            FLFTSESV+EGHPDK+ DQISDA+LDA  +QDP+++VA ET   T +V++ GEITT A VDY ++ RDT + IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET E MP +   A ++  R +E+RK+    WLRPD K+QVT+ Y +      PV + T+++STQH   + + +I   + E +IKPV+P ++L + T F +NP
Sbjct:    5 FLFTSESVSEGHPDKVADQISDAILDAIFQQDPKARVAAETLCNTGLVVLAGEITTFANVDYIEVARDTIKRIGYDNADYGIDYKSCSVLVAYDKQSPDIAQGV-DEGAGIDLDQGAGDQGLMFGYACDETPELMPAAIHYAHRIVERQSELRKDGRLPWLRPDAKSQVTLRYVDGR----PVSIDTIVLSTQHAPEMQHKDIEEAVIESIIKPVVPAEWLKD-TRFLVNP 229          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_POLNS (S-adenosylmethionine synthetase OS=Polynucleobacter necessarius (strain STIR1) GN=metK PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.667e-54
Identity = 111/231 (48.05%), Postives = 155/231 (67.10%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            + FTSESV+EGHPDK+ DQISD++LDA L QDP ++VA ET   T +V++ GEITT A VDY ++ R+T R IG+ + D G+D   C VLV  ++QSPDIAQGV         D GAGDQG MFGYA DET+E MPL   L+ +L  R +++R++   +WLRPD K+QVT+ Y +      P  + TV++STQHDE ++ +++   + E +IKPV+P+  +     F +NP
Sbjct:    5 YFFTSESVSEGHPDKVADQISDSILDAILAQDPTARVAAETLCNTGLVVLAGEITTNANVDYIQVARNTLREIGYDNTDYGIDYKGCAVLVAYDKQSPDIAQGVDKAHDD-GLDQGAGDQGLMFGYACDETAELMPLPIHLSHRLVERQSQLRRDGRLNWLRPDAKSQVTLRYVDGK----PDSIDTVVLSTQHDEDISLEKLREAVIEEIIKPVLPKHLIKGAINFLVNP 230          
The following BLAST results are available for this feature:
BLAST of DY258060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_CLAMS9.166e-5551.57S-adenosylmethionine synthetase OS=Clavibacter mic... [more]
METK_BORPD9.166e-5550.00S-adenosylmethionine synthetase OS=Bordetella petr... [more]
METK_POLSQ1.197e-5448.48S-adenosylmethionine synthetase OS=Polynucleobacte... [more]
METK_PROM01.563e-5449.00S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_MARAV1.563e-5450.00S-adenosylmethionine synthetase OS=Marinobacter aq... [more]
METK_THET82.042e-5450.42S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_THET22.042e-5450.42S-adenosylmethionine synthetase OS=Thermus thermop... [more]
METK_MYXXD2.042e-5448.92S-adenosylmethionine synthetase OS=Myxococcus xant... [more]
METK_HERAR2.042e-5449.35S-adenosylmethionine synthetase OS=Herminiimonas a... [more]
METK_POLNS2.667e-5448.05S-adenosylmethionine synthetase OS=Polynucleobacte... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258060 ID=DY258060; Name=DY258060; organism=Citrus clementina; type=EST; length=803bp
GGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGT
CTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGA
TGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGAC
AAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCA
GGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGG
TCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAG
ATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGG
TCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCC
CGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGAC
ATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGAC
CTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTC
GTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGAT
GGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCATGGT
CCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTG
TCACAAATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCT
GTCATCCCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCC
ATC
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