DY258060

Overview
NameDY258060
Unique NameDY258060
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length803
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_BORBR (S-adenosylmethionine synthetase OS=Bordetella bronchiseptica GN=metK PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.549e-54
Identity = 116/234 (49.57%), Postives = 148/234 (63.25%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI---GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            FLFTSESV+EGHPDK+ DQISDA+LDA   QDP ++VA ET   T +V++ GEITT A VDY ++ RDT R IG+ + + G+D   C VLV  ++QSPDIAQGV     +  ED    GAGDQG MFGYA DET + MP     A +L  R +E+RK+    WLRPD K+QVT  Y +      P  V TV++STQH   ++   I   + E +IKP  PE  +  KT F +NP
Sbjct:    6 FLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGYDNTEYGIDYKGCAVLVAYDKQSPDIAQGV----DRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDGRLPWLRPDAKSQVTFRYVDGR----PAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNP 231          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_ACIF5 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=metK PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.549e-54
Identity = 111/233 (47.64%), Postives = 150/233 (64.38%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            ++ LFTSESV+EGHPDK+ DQISDA+LDA L QDP  +VA ET   T ++++ GEITT A VDY  + R T R IG+ S D+G D   C V+  +++QSPDIAQGV         D GAGDQG MFG+A DET   MP     A +L  R   VRK+    WLRPD K+QVTV Y +D     PV + TV++STQH   +++ ++   ++E +IKPV+P + + + T + +NP
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV-DEGAGLDLDQGAGDQGLMFGFACDETDVLMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDTKYLINP 230          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_ACIF2 (S-adenosylmethionine synthetase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=metK PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 4.549e-54
Identity = 111/233 (47.64%), Postives = 150/233 (64.38%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            ++ LFTSESV+EGHPDK+ DQISDA+LDA L QDP  +VA ET   T ++++ GEITT A VDY  + R T R IG+ S D+G D   C V+  +++QSPDIAQGV         D GAGDQG MFG+A DET   MP     A +L  R   VRK+    WLRPD K+QVTV Y +D     PV + TV++STQH   +++ ++   ++E +IKPV+P + + + T + +NP
Sbjct:    3 KSHLFTSESVSEGHPDKVADQISDAILDAILAQDPRGRVAAETLITTGLIVLAGEITTTAVVDYADVARQTVRRIGYNSSDMGFDWASCAVVQTLDKQSPDIAQGV-DEGAGLDLDQGAGDQGLMFGFACDETDVLMPTPIYFAHRLTERQAMVRKDGRLPWLRPDAKSQVTVRYEDDR----PVAIDTVVLSTQHAPDISHADLVEAVREEIIKPVLPPEMIHKDTKYLINP 230          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_SYNJA (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain JA-3-3Ab) GN=metK PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 5.941e-54
Identity = 121/246 (49.19%), Postives = 151/246 (61.38%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPED------IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPVIPEKYL--DEKTIFHLNP 801
            +F+SESV EGHPDK+CDQISDA++DA L  DP S+VA E    T MV++ GEIT++A V++ ++VRD    IG+     G  A+ C VLV  ++QSPDIAQGV+     R         IGAGDQG MFG+A DET E MPL   LA +L  +L  VRKN T  +LRPDGKTQVTV Y        PV +HT+LISTQH        +E    + I ADL E V++PV  E  +  D  T F  NP
Sbjct:    1 MFSSESVTEGHPDKICDQISDAIVDALLTADPLSRVAAEVVVNTGMVILTGEITSQAHVNFTRLVRDKVAEIGYTDAKNGFSAESCAVLVAFDEQSPDIAQGVNLALESRTSQEDEFDLIGAGDQGLMFGFACDETPELMPLPISLAHRLSRQLAAVRKNGTLPYLRPDGKTQVTVAYEEGR----PVGIHTLLISTQHTPTIGAITEEAAVQERIRADLWEAVVQPVFAELPIKPDGNTRFLTNP 242          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_PSEMY (S-adenosylmethionine synthetase OS=Pseudomonas mendocina (strain ymp) GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 113/233 (48.50%), Postives = 153/233 (65.67%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            E  LFTSESV+EGHPDK+ DQISDAVLDA + QD  ++VA ET  KT + +V GE+TT A VD E+IVRD   +IG+ S DVG D + C ++  I +QSPDI QGV      +PED GAGDQG MFGYA++ET   MP   VL+ +L  R  E RK+    WLRPD K+QVT  Y  +NG +  V +  V++STQH+  ++  ++   + E ++K  +P + L + T +H+NP
Sbjct:    3 EYSLFTSESVSEGHPDKIADQISDAVLDAIIVQDKHARVAVETLVKTGVAIVAGEVTTSAWVDLEQIVRDVICNIGYTSSDVGFDGNTCGIINIIGKQSPDINQGVD---RAKPEDQGAGDQGLMFGYASNETDVLMPAPIVLSHRLVERQAEARKSGLLPWLRPDAKSQVTCRY--ENGKV--VGIDAVVLSTQHNPEISQADLQEAVMELIVKHTLPAELLHKDTQYHINP 228          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_NOCSJ (S-adenosylmethionine synthetase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 118/221 (53.39%), Postives = 144/221 (65.16%), Query Frame = 1
Query:  112 LFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDI------GAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVI 756
            LFTSESV EGHPDK+ DQISD+VLDA LE DP S+VA ET   T +V+V GE+TT   VD + +VR     IG+ S   G D   C V+V I  QS DIAQGV      R   +      GAGDQG MFGYA D+T   MPL  V+A +L  +LT VRK+ T  +LRPDGKTQVT+EY  +N    PVRV TV++S+QHDE    D + AD+K+HVI PV+
Sbjct:    5 LFTSESVTEGHPDKIADQISDSVLDAMLELDPTSRVAVETLLTTGVVVVAGEVTTTGYVDVKDVVRRRIIEIGYDSSVKGFDGHSCGVMVAIGGQSGDIAQGVDTGHESRTGSVDAMDKQGAGDQGLMFGYACDDTDVLMPLPIVIAQRLAEQLTAVRKDGTLPYLRPDGKTQVTIEYDAENR---PVRVDTVVLSSQHDEDTELDTLEADVKKHVIDPVL 222          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_ALCBS (S-adenosylmethionine synthetase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=metK PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.759e-54
Identity = 112/233 (48.07%), Postives = 150/233 (64.38%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            E  +FTSESV+EGHPDK+ DQISDA+LDA ++ DP ++VA ET  KT M +V GE+ T   V+ E IVR     IG+ S + G D   C VL  I +QS DIA GV        +++GAGDQG MFG+ATDET   MP     + +L  R  ++RKNST  WLRPD K+QVT+ Y  DNG   PV V  V++STQH   +   ++   + E +IKPV+PE++L + T++H+NP
Sbjct:    3 EYSIFTSESVSEGHPDKMADQISDAILDAIIKDDPHARVAVETMVKTGMAVVAGEVRTNTYVELEDIVRQVILDIGYDSSEKGFDGASCAVLNGIGKQSADIAIGVD---EAEEKEMGAGDQGLMFGFATDETDTLMPAPVYYSHRLVERQAKLRKNSTLPWLRPDAKSQVTLRY--DNGK--PVAVDAVVLSTQHSPDIKLADLREAVMEEIIKPVLPEEWLHKDTLYHVNP 228          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_THEEB (S-adenosylmethionine synthetase OS=Thermosynechococcus elongatus (strain BP-1) GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 120/248 (48.39%), Postives = 155/248 (62.50%), Query Frame = 1
Query:  109 FLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRP-------EDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQH--------DETVTNDEIAADLKEHVIKPVIPEKYL--DEKTIFHLNP 801
            +LF+SESV EGHPDK+CDQI+DA+LDA L QDP+S+VA E    T +V++ GEITTKA+V+Y  + R     IG+   + G  A+ C VLV +++QSPDIA+GV      R        + IGAGDQG MFGYA +ET E+MPL   LA ++  RL  VRK     +LRPDGKTQVTV Y +      PV + T+LISTQH        +E+    +I ADL E V+KPV  +  L  D  T F +NP
Sbjct:    3 YLFSSESVTEGHPDKICDQIADAILDALLTQDPQSRVAAEVVVNTGLVLITGEITTKAQVNYVNLARQKIHEIGYTDANNGFAANSCAVLVALDEQSPDIARGVDTAQEAREQLSDAELDRIGAGDQGIMFGYACNETPEYMPLPISLAHRMARRLAAVRKTGQLPYLRPDGKTQVTVIYEDGK----PVGIDTILISTQHTATIDDISEESAVQAKIKADLWEAVVKPVFADLTLQPDGNTRFLVNP 246          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_HAHCH (S-adenosylmethionine synthetase OS=Hahella chejuensis (strain KCTC 2396) GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 114/233 (48.93%), Postives = 144/233 (61.80%), Query Frame = 1
Query:  103 ETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            E  +FTSESV+EGHPDK+ DQISDA+LDA ++ DP ++VA ET  KT M ++ GE+ T   VD E IVR     IG+ S DVG D   C VL  I +QS DIA GV     K   D+GAGDQG MFGYAT+ET   MP     + +L  R   +RKNS   WLRPD K+QVT+ Y N      PV V  V++STQH   V   +I   + E +IK V+PE++L   T +H+NP
Sbjct:    3 EYSIFTSESVSEGHPDKMADQISDAILDAIIKDDPNARVAVETLVKTGMAVIAGEVRTNTYVDLEDIVRSVILDIGYNSSDVGFDGASCAVLNAIGKQSGDIAMGVDEASEK---DLGAGDQGLMFGYATNETDVLMPAPIYYSHRLVERQAYLRKNSILPWLRPDAKSQVTLRYENGK----PVAVEAVVLSTQHTPDVKQSDIREAVMEEIIKHVLPEEWLHSNTQYHINP 228          
BLAST of DY258060 vs. ExPASy Swiss-Prot
Match: METK_COXBN (S-adenosylmethionine synthetase OS=Coxiella burnetii (strain Dugway 5J108-111) GN=metK PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.013e-53
Identity = 109/232 (46.98%), Postives = 146/232 (62.93%), Query Frame = 1
Query:  106 TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNP 801
            T LFTSESV+EGHPDK+ DQISDAVLDA + QDP  +VACE   K+ MV V GEITT A  D E+I R+T   IG+    +G D + C V+  I +QSPDI  GV G   +  +++GAGDQG MFGYA+ ET  FMP     A +L  +   +RKN    WLRPD K+QVT+ Y N      PV    +++STQH   ++ + +   + + +IKP++P  +LD+ T F +NP
Sbjct:    4 TTLFTSESVSEGHPDKVADQISDAVLDALISQDPNCRVACEAVVKSGMVFVAGEITTNAWADVEQITRNTVLQIGYNDPHLGFDGETCAVVTAIGKQSPDIVMGVDG---REDQELGAGDQGLMFGYASRETDVFMPAPITYAHRLVRQQALLRKNGRLPWLRPDAKSQVTLRYENGK----PVAADCIVLSTQHSPEISQESLREAVIDEIIKPIMPPHWLDKHTRFLVNP 228          
The following BLAST results are available for this feature:
BLAST of DY258060 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_BORBR4.549e-5449.57S-adenosylmethionine synthetase OS=Bordetella bron... [more]
METK_ACIF54.549e-5447.64S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_ACIF24.549e-5447.64S-adenosylmethionine synthetase OS=Acidithiobacill... [more]
METK_SYNJA5.941e-5449.19S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_PSEMY7.759e-5448.50S-adenosylmethionine synthetase OS=Pseudomonas men... [more]
METK_NOCSJ7.759e-5453.39S-adenosylmethionine synthetase OS=Nocardioides sp... [more]
METK_ALCBS7.759e-5448.07S-adenosylmethionine synthetase OS=Alcanivorax bor... [more]
METK_THEEB1.013e-5348.39S-adenosylmethionine synthetase OS=Thermosynechoco... [more]
METK_HAHCH1.013e-5348.93S-adenosylmethionine synthetase OS=Hahella chejuen... [more]
METK_COXBN1.013e-5346.98S-adenosylmethionine synthetase OS=Coxiella burnet... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD07ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258060 ID=DY258060; Name=DY258060; organism=Citrus clementina; type=EST; length=803bp
GGCCCAAACTCAATTGAGTTCCGCTTTGCTATTGAGGTCTGGTCTTAAGT
CTGAATCTTAGATCTGCGCCGAAACACTTGCCAGCCACAGCTTGATAAGA
TGGAGACCTTTCTATTCACCTCTGAATCTGTGAACGAGGGTCACCCCGAC
AAGTTGTGCGACCAGATCTCTGATGCGGTGCTTGACGCCTGCCTTGAGCA
GGATCCTGAGAGCAAGGTTGCCTGTGAGACATGCACCAAGACCAACATGG
TCATGGTCTTTGGAGAGATTACCACCAAGGCCAAGGTAGACTATGAGAAG
ATTGTTCGCGACACTTGCCGTTCCATTGGATTTGTTTCTGATGATGTGGG
TCTTGACGCCGATCACTGCAAAGTCCTGGTCAATATTGAGCAACAAAGCC
CGGATATTGCCCAGGGTGTTCATGGCCACTTTACAAAGCGCCCTGAGGAC
ATTGGTGCTGGTGACCAGGGCCATATGTTTGGTTATGCTACTGATGAGAC
CTCTGAATTTATGCCTTTGAGCCATGTCCTTGCCACCAAACTTGGTGCTC
GTCTCACGGAGGTTAGGAAGAATAGTACCTGCTCTTGGCTAAGGCCCGAT
GGGAAGACCCAGGTCACTGTTGAGTACTACAACGACAATGGTGCCATGGT
CCCAGTCCGTGTCCACACGGTCCTCATTTCAACCCAGCATGATGAGACTG
TCACAAATGATGAAATTGCTGCTGACCTTAAGGAGCACGTCATTAAGCCT
GTCATCCCCGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTTAATCC
ATC
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