DY258062

Overview
NameDY258062
Unique NameDY258062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA1 (Triosephosphate isomerase OS=Mycobacterium avium (strain 104) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.987e-35
Identity = 97/246 (39.43%), Postives = 127/246 (51.63%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE LE REAG+ +     Q +     +S+     +V+AYEPVWAIGTG+VA+   AQEV   +RK L +  S +IA + R++YGGSVN  N  EL AQ D+DG LVGGASL  E
Sbjct:    1 MSRKPLIAGNWKMNLNHFEAIALVQKIAFALPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLSYGAQDLSQHDSGAYTGDISGAFLAKLGCTFVVVGHSERRTYHNEDDALVAAKAAAALKHELTPIICIGEHLEVREAGNHVIHCEEQLRGSLAGLSAEQIGKVVIAYEPVWAIGTGRVASASDAQEVCAAIRKELASLASAQIADSVRVLYGGSVNAKNVGELIAQDDIDGGLVGGASLDGE 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.987e-35
Identity = 96/243 (39.51%), Postives = 125/243 (51.44%), Query Frame = 3
Query:   66 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIK 785
            + GNWK NG      +  ++L  G                  L       R    VA  AQ+C  K  GA TG+ISAEML +     VI+GHSERR    ES+  V  K   A   GL  I CVGET +QR+AG T++++  Q        S   N+++AYEPVWAIGTG   T    +++H  +R+ L      E  A  RI+YGGSV  +N  EL A  +V+G LVGGASLK  +F+ I K
Sbjct:    9 IAGNWKMNGLKASAAEFEAML-AGAAEVTGKADLLVCPPATLLAAFAEKTRGGKAVAVGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGETQQQRDAGLTLEILRGQLTLSLPEGSRADNLIVAYEPVWAIGTGLTPTAGDVEQIHSFIRQLLIVRFK-EQGARMRILYGGSVKPSNAAELMAVANVNGALVGGASLKAADFLAIAK 249          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_THET8 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tpiA PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.174e-34
Identity = 95/250 (38.00%), Postives = 130/250 (52.00%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 791
            R+  V GNWK + T  E +   + L   +                 L + K  L        AQ+    K GA+TGE+SA ML +L   + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP  A+ +H  +RK L        A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:    2 RRVLVAGNWKMHKTPSEARVWFAELK--RLLPPLQSEAAVLPAFPILPVAKEVLAETQVGYGAQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_STRMU (Triosephosphate isomerase OS=Streptococcus mutans GN=tpiA PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 1.174e-34
Identity = 91/252 (36.11%), Postives = 129/252 (51.19%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE----FIDIIK 785
            M RK  + GNWK N T  E ++ +  +                      G+ K     +  VAAQNC+ +  GAFTGE S   L  L + +VI+GHSERR   +E+++ +  K        +  I C GE+LE  EAG T + +  Q  A    +S+   S++V+AYEP+WAIGTGK A    A ++   +R  +      E+A A RI YGGSV   N  E  A+ +VDG LVGGASL+ +     +D +K
Sbjct:    1 MSRKPIIAGNWKMNKTAAEAREFIDAVKNNIPSNNLVDTVIGSPALFLEGMKKGVKGTELQVAAQNCYWEDFGAFTGETSPAALAALGVDYVIIGHSERRDYFHETDQEINKKAHAIFKHKMTPILCCGESLETYEAGKTAEWIEGQITADLKGLSAEQVSSMVIAYEPIWAIGTGKSADANIADDICGVVRATVEKLYGKEVAQAVRIQYGGSVKPENVAEYMAKENVDGALVGGASLQADSFLALLDFVK 252          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.174e-34
Identity = 94/248 (37.90%), Postives = 133/248 (53.63%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEG-QXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 782
            RK F+ GNWK + T+ E   +   + +G Q                   + + +   +  + AQN   +  GA T EIS  ML+   + +VILGHSE R  L +++E +  K+   L    K +I C+GETL +RE   T+DVV  Q +   ++   S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:    2 RKMFLAGNWKMHYTSVEAAGVAKQIVDGVQNINDDVVIMITPAFTSLCKVCEVTKGSNVLLGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_METFK (Triosephosphate isomerase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.533e-34
Identity = 93/238 (39.08%), Postives = 124/238 (52.10%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS---NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 758
            R+  V GNWK NG   + K+++  L  G                      K     +    AQN    + GA+TGE+SA ML      +VI+GHSER     ESN  + +K A A   G+  I CVGETL++RE+G     +A Q  A+   VS  +     V+AYEPVWAIGT + ATP QA+  H  +R+ + A   P  A + RIIYGGSVN  N  +L + PD+DG L+G  SL
Sbjct:    2 RRKLVVGNWKMNGNLAQNKRLLEALVRGLQDVEHVDIAVCVPYPYLFQAQKILSGTNIAWGAQNVAKHENGAYTGEVSAAMLKEFGASYVIVGHSERSDAYCESNANIAEKFAIAKHYGITPIFCVGETLQERESGVMEYAIANQLDAVLS-VSGGALLDQAVIAYEPVWAIGTNRTATPEQARAAHSFIRERI-AAMHPGAAESVRIIYGGSVNPRNAAQLLSMPDIDGGLIGRCSL 237          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.533e-34
Identity = 87/253 (34.39%), Postives = 135/253 (53.36%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRP-DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRII--YGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 794
            +K  +  NWK NG+ + +   ++ L                    FL  V   +   + H+AAQN  V   GAFTGE SA M+ ++ + ++I+GHSERRL+ NE+NE +  K     +  L  I C+GET  ++++  T  ++  Q  +I +     ++ N V+AYEP+W+IGTG  A P   Q +H  ++ ++      +I +A  +I  YGGSV   N      QPD+DG L+G ASLK  EF+ IIK ++
Sbjct:    2 KKKIIAANWKLNGSIKTISYFLTFLKSQISSFLKNNIIIIAPPTVFLERVYKDINSINIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGETEAEKKSNKTEKILKEQLNSIFNSFGEKAFRNAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYI---KKYDIVSAENLIVQYGGSVTSLNAGNFLKQPDIDGLLIGSASLKHEEFLKIIKISD 251          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_RHOSR (Triosephosphate isomerase OS=Rhodococcus sp. (strain RHA1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.002e-34
Identity = 94/246 (38.21%), Postives = 125/246 (50.81%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N    E    V+KI   L                     +  +    +      AQ+      GA+TGEIS  ML  L   +V++GHSERR +  E N+ V  K   AL  G+  I C+GE L+ REAG  +     Q +     +S    + +V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++A+  R++YGGSVN  N  E+  Q DVDG LVGGASLK +
Sbjct:    1 MARKPLIAGNWKMNLNHLEAIALVQKIAFSLPAKYFDKVDVTVIPPFTDIRSVQTLVEGDKLLLTYGAQDVSAHDSGAYTGEISGSMLAKLGCTFVVVGHSERRTLHCEDNDTVLAKTKAALKNGITPIVCIGEGLDVREAGEHVSYNVEQLRGSLAGLSGEDIAKVVIAYEPVWAIGTGRVASAANAQEVCAAIRATLGELASQDVASGVRVLYGGSVNAKNVGEIVGQTDVDGALVGGASLKAD 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.002e-34
Identity = 88/179 (49.16%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  237 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            AQ+   +  GAFTGE++A ML      + I+GHSERR    E++  V  K   AL  G+  I CVGETL QREAG T  VVA Q +A+ + +S     +IV+AYEPVWAIGTGK AT  QAQ VH  LR  + A     +A    I+YGGSV   N  EL    D+DG L+GGASLK E
Sbjct:   63 AQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLRGRV-AACDAGVAQRMPILYGGSVKPDNAAELFTMADIDGGLIGGASLKAE 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.002e-34
Identity = 90/245 (36.73%), Postives = 127/245 (51.84%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N T  E +  V  +                       +       +  +AA+N + +  GAFTGE S   +V+L I ++I+GHSERR   +E++E +  K     + G   I C GETLE  EAG T + V+ Q +A      A++V   SN+V+AYEP+WAIGTGK AT   A E    +R  +      E++ A RI YGGSV     + L A+ ++DG LVGGASL+ +
Sbjct:    1 MSRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQGSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGETLETFEAGKTAEWVSGQIEAGLAGLTAEQV---SNLVIAYEPIWAIGTGKTATNEIADETCGVVRSTVEKLYGKEVSEAVRIQYGGSVKPETIEGLMAKENIDGALVGGASLEAD 242          
The following BLAST results are available for this feature:
BLAST of DY258062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCA18.987e-3539.43Triosephosphate isomerase OS=Mycobacterium avium (... [more]
TPIS_BRASO8.987e-3539.51Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_THET81.174e-3438.00Triosephosphate isomerase OS=Thermus thermophilus ... [more]
TPIS_STRMU1.174e-3436.11Triosephosphate isomerase OS=Streptococcus mutans ... [more]
TPIS_BORHD1.174e-3437.90Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_METFK1.533e-3439.08Triosephosphate isomerase OS=Methylobacillus flage... [more]
TPIS_BUCAP1.533e-3434.39Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_RHOSR2.002e-3438.21Triosephosphate isomerase OS=Rhodococcus sp. (stra... [more]
TPIS_RALSO2.002e-3449.16Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_LACLM2.002e-3436.73Triosephosphate isomerase OS=Lactococcus lactis su... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258062 ID=DY258062; Name=DY258062; organism=Citrus clementina; type=EST; length=1029bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTG
CTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAG
TAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTGCTGATGAAGTATTTAC
TGTTTGTGGATATATAGAATACGTTTTGTATAATTTCAGAATTACTTTTT
GTTTTTGATAAGCGCGACCAACTGAAACCTTTTTTTAACTTTTTTAATTA
TCTTTGTTTCCTAAGTTGTGGAAGTTGAATAATCTTTAAGAATTGGTTAC
CTTGCGCAAGGGAATTGCAAATTCCTCCT
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