DY258062

Overview
NameDY258062
Unique NameDY258062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258062_ssr25 microsatellite DY258062_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:10..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSK (Triosephosphate isomerase OS=Mycobacterium sp. (strain KMS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.936e-34
Identity = 94/246 (38.21%), Postives = 125/246 (50.81%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_MYCSJ (Triosephosphate isomerase OS=Mycobacterium sp. (strain JLS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.936e-34
Identity = 94/246 (38.21%), Postives = 125/246 (50.81%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR   +E +  V  K A A   G+  I C+GE L+ REAG+ ++    Q +     ++S      V+AYEPVWAIGTG+VA    AQEV   +R  L   +SP++AA  R++YGGSVN  N  E+ AQ DVDG LVGGASL  E
Sbjct:    1 MARKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDLRSVQTLVDGDKLRLSYGAQDVSQHDSGAYTGEISGAFLAKLGCSFAVVGHSERRTYHHEDDALVAAKAAAAFRHGITPIVCIGEHLKVREAGNHVEHNVEQLRGSLAGLTSEQIGQAVIAYEPVWAIGTGRVAGAADAQEVCKAIRDELGKLSSPQLAAGIRVLYGGSVNAKNVGEIVAQEDVDGALVGGASLDGE 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_MYCLE (Triosephosphate isomerase OS=Mycobacterium leprae GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.936e-34
Identity = 93/243 (38.27%), Postives = 123/243 (50.62%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 758
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TG+IS   L  L   +V++GHSERR   +E +  V  K A AL   L  I C+GE LE RE G  +     Q +     +S     N+V+ YEPVWAIGTG+VA+   AQEV   +RK L A  SP++A   R++YGGS+N  N  ++ AQ DVDG LVGGASL
Sbjct:    1 MSRKSLIAGNWKMNLNHFEAIALVQKIAFSLPDKYYDKVDVTVLPPFTDLRSVQTLVDGDKLRLTYGAQDLSQHDLGAYTGDISGAFLAKLGCSFVLVGHSERRTYHDEGDALVAAKTAAALKNSLTPIVCIGEYLEIREVGEHVSHCQNQLRGSLAGLSPEQIGNVVIVYEPVWAIGTGRVASAADAQEVCEAIRKELGALASPQVAETVRVLYGGSLNAKNIGDIVAQQDVDGGLVGGASL 243          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BART1 (Triosephosphate isomerase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.936e-34
Identity = 85/234 (36.32%), Postives = 122/234 (52.14%), Query Frame = 3
Query:   63 FVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 761
            F+ GNWK NGT E + ++ ++                      L     +L  +   +  QNC     G +TG+ISA ML       VI+GHSERR +  E++  V  KV  A   GL  + C+GETLE+R+    MDV+A Q +      ++  N ++AYEPVWAIGTG  AT     +VH+ +R  + +    E     R++YGGSV  ++  EL + P V+G L+GGASLK
Sbjct:    8 FLAGNWKMNGTRESLGELRAIATGVSSNSGHLFEALICVPATLLSRAYDTLNGESLLLGGQNCHFDDYGPYTGDISAFMLKEAGASHVIIGHSERRTVYQENDAIVCAKVQAAWHAGLVALVCIGETLEERDNNKVMDVLAQQLEGSLPDDTTAENTIIAYEPVWAIGTGNTATSEDIAKVHYFIRDKICSRFGDE-GNKIRLLYGGSVKPSSAFELLSIPHVNGALIGGASLK 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS3_RHIEC (Triosephosphate isomerase (Fragment) OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 9.936e-34
Identity = 81/161 (50.31%), Postives = 106/161 (65.84%), Query Frame = 3
Query:  264 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFL 740
            GA+TGE+SAE+L +  I +V++GHSERR    ES   +  K   AL+ GLKVI CVGE+LEQRE+G    VV  Q   +A  V++  W +IV+AYEP+WAIGTGK A+P  AQ +H ++R+ L   TS    A   I+YGGSV   N  ELAA PD++G L
Sbjct:   68 GAYTGEVSAELLKDSQIEYVLIGHSERREYFAESAAILNAKAQNALNAGLKVIYCVGESLEQRESGQAEVVVLQQICDLASVVTAEQWPHIVIAYEPIWAIGTGKTASPEDAQTMHAKIREGLTQITSH--GANMAILYGGSVKAENAVELAACPDINGAL 226          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_SYNJB (Triosephosphate isomerase OS=Synechococcus sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.298e-33
Identity = 95/249 (38.15%), Postives = 124/249 (49.80%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVS----VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 782
            R   + GNWK + T  E ++ +      L                     L +V    R  D  V AQN   +  GAFTGEIS  ML  L + +VI+GHSERR    E++E V  ++A A   GL  I CVGE+ +QRE G T   +  Q       +    N+V+AYEP+WAIGTG+     +A  V   +R+ L     P       I+YGGSV   N  EL AQP++DG LVGGASL P EF  I+
Sbjct:    2 RPILIAGNWKMHKTQAEAREFLRELGLALRSSPSGSASQRQIILCVPFTDLAVVAEQSRGSDIAVGAQNLHWEDQGAFTGEISGPMLAELGVRYVIVGHSERRQYFGETDETVNRRLAAAQRHGLTPILCVGESQQQREQGLTESWIVGQLDRALQGI-DLENLVIAYEPIWAIGTGQTCAAQEANRVIGLIRQHLGNAQLP-------ILYGGSVKAGNIDELMAQPEIDGVLVGGASLDPQEFARIV 242          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_SACEN (Triosephosphate isomerase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.298e-33
Identity = 99/246 (40.24%), Postives = 125/246 (50.81%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAG-----STMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL 758
            M R+  + GNWK N    E    V+KI   L E                   +  +    +      AQ+    + GA+TGE+S  ML  L   +V++GHSERR    E++E V  KV   L  G+  I CVGE LE REAG     ST  ++ A      +++     +V+AYEPVWAIGTGKVAT   AQEV   LR  L      EIA   R++YGGSV  +N  EL  Q DVDG LVGGASL
Sbjct:    1 MARQPLIAGNWKMNLNHLEAIALVQKIAFSLPEKYFAKVEVAVIPPFTDIRSVQTLIDGDKLLLKHGAQDVSEHESGAYTGEVSGPMLAKLGCSYVVVGHSERREHHAETDEVVNRKVRAVLKHGMSPILCVGEPLEVREAGGHVEHSTTQLINALKGLKTEQIRQ---VVVAYEPVWAIGTGKVATAADAQEVCAALRTALADKYGKEIADEVRVLYGGSVKSSNIGELIGQNDVDGALVGGASL 243          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.298e-33
Identity = 87/240 (36.25%), Postives = 124/240 (51.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            RK  + GNWK N T  E +     +                       L  +    +  +AAQNC+ +  GAFTGE S   + +L + +VI+GHSERR   +E++E +  K     + G+  I C GETLE  EAG T + +  Q TK +    +   +++V+AYEP+WAIGTGK A    A E+   +R  +      E++ A RI YGGSV   N  E  A+ +VDG LVGGASL+ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGETLETYEAGKTAEWIEGQITKGLVGLSNEQVASMVIAYEPIWAIGTGKSADANIADEICGVVRSTVEKLYGKEVSEAVRIQYGGSVKPENIAEYMAKENVDGALVGGASLEAD 241          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_PHYAS (Triosephosphate isomerase OS=Phytoplasma australiense GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.695e-33
Identity = 84/245 (34.29%), Postives = 137/245 (55.92%), Query Frame = 3
Query:   66 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 791
            + GNWK      E  + +  +N                    L ++  +  P+  + AQN + +  GAFTGEIS   LV+L + +V+LGHSERR++  E+++ V  K+  AL   L  + C+GETLE +E   T + +  Q T+A+ D        I++AYEPVWAIGTGK A+P +A +   ++R+ +    S ++  + +I+YGGSV+  N + +  Q ++DG LVG ASL+  +F++  ++A
Sbjct:   10 IAGNWKMYKDKNEALEFIQKVNFS-IPNSKEVETIIFAQSTLLDVLVQNQGPNLKIGAQNAFHESEGAFTGEISPLNLVSLGVKYVLLGHSERRVLFGETDQLVNLKLLKALQNNLSPVLCLGETLETKENNKTKEFLEKQLTQALKDVPQEDLEKILIAYEPVWAIGTGKTASPQEANQTIKQIREKVTNLYSAQVVQSLKILYGGSVSSNNVEAILEQNEIDGVLVGKASLETKDFLNFTQAA 253          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGI (Triosephosphate isomerase OS=Mycobacterium gilvum (strain PYR-GCK) GN=tpiA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.695e-33
Identity = 94/246 (38.21%), Postives = 124/246 (50.41%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEE----VKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 767
            M RK  + GNWK N    E    V+KI   L +                   +  +    +      AQ+      GA+TGEIS   L  L   + ++GHSERR    E++E V  K   AL  GL  I C+GE LE REAG+ ++      +     +S+   +  V+AYEPVWAIGTG+VA+   AQEV   +R  L    S ++AA  R++YGGSVN  N  E+  Q DVDG LVGGASL  E
Sbjct:    1 MTRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDRVDVTVIPPFTDLRSVQTLVDGDKLRLTYGAQDVSQHDSGAYTGEISGAFLAKLGCTFAVVGHSERRTYHGETDELVAAKATAALKHGLTPIVCIGEQLEVREAGNHVEFNVNSLRGSLAGLSAEQIAQTVIAYEPVWAIGTGRVASAADAQEVCKAIRDELGNLASADVAAGVRVLYGGSVNAKNVGEIVGQGDVDGALVGGASLDGE 246          
The following BLAST results are available for this feature:
BLAST of DY258062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCSK9.936e-3438.21Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCSJ9.936e-3438.21Triosephosphate isomerase OS=Mycobacterium sp. (st... [more]
TPIS_MYCLE9.936e-3438.27Triosephosphate isomerase OS=Mycobacterium leprae ... [more]
TPIS_BART19.936e-3436.32Triosephosphate isomerase OS=Bartonella tribocorum... [more]
TPIS3_RHIEC9.936e-3450.31Triosephosphate isomerase (Fragment) OS=Rhizobium ... [more]
TPIS_SYNJB1.298e-3338.15Triosephosphate isomerase OS=Synechococcus sp. GN=... [more]
TPIS_SACEN1.298e-3340.24Triosephosphate isomerase OS=Saccharopolyspora ery... [more]
TPIS_ENTFA1.298e-3336.25Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS_PHYAS1.695e-3334.29Triosephosphate isomerase OS=Phytoplasma australie... [more]
TPIS_MYCGI1.695e-3338.21Triosephosphate isomerase OS=Mycobacterium gilvum ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258062 ID=DY258062; Name=DY258062; organism=Citrus clementina; type=EST; length=1029bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTG
CTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAG
TAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTGCTGATGAAGTATTTAC
TGTTTGTGGATATATAGAATACGTTTTGTATAATTTCAGAATTACTTTTT
GTTTTTGATAAGCGCGACCAACTGAAACCTTTTTTTAACTTTTTTAATTA
TCTTTGTTTCCTAAGTTGTGGAAGTTGAATAATCTTTAAGAATTGGTTAC
CTTGCGCAAGGGAATTGCAAATTCCTCCT
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