DY258062

Overview
NameDY258062
Unique NameDY258062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258062_ssr25 microsatellite DY258062_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:10..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_CANAL (Triosephosphate isomerase OS=Candida albicans GN=TPI1 PE=1 SV=3)

HSP 1 Score: 241.121 bits (614), Expect = 7.800e-63
Identity = 124/248 (50.00%), Postives = 163/248 (65.73%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGL-VKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R+FFVGGN+K NGT +++  I+  LN+                  +LGL V+ + +P   + AQN + K  GAFTGE  A  ++++   W + GHSERR I+ ES+EF+ +K  +AL  G+KVI C+GETLE+R+ G T+DV A Q  A++  VS WSNIV+AYEPVWAIGTG  ATP  A+E H  +R  L  +   E A  TRI+YGGSVNG N K+   + +VDGFLVGGASLKPEF+DIIKS
Sbjct:    1 MARQFFVGGNFKANGTKQQITSIIDNLNKADLPKDVEVVICPPAL--YLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVSDWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANVDGFLVGGASLKPEFVDIIKS 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 1.019e-62
Identity = 129/250 (51.60%), Postives = 164/250 (65.60%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTT-EEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R FFVGGNWK N T+    K +V  LN+                  +L  ++        VAAQN + K+ GAFTGEIS + + +  IP+VILGHSERR + +E++E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT  QAQE H ++RK+L    SP++A+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:    1 MTRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPAL--YLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 1.126e-61
Identity = 120/249 (48.19%), Postives = 160/249 (64.26%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXX--FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R FFVGGN+K NG+ + +K+IV  LN                      + LVK   +P   V AQN ++K  GAFTGE S + + ++   WVILGHSERR   +E ++F+ DK  +AL QG+ VI C+GETLE+++AG T+DVV  Q  A+ + V  W+N+V+AYEPVWAIGTG  ATP  AQ++H  +RK+L +    + A+  RI+YGGS NG+N      + DVDGFLVGGASLKPEF+DII S
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVK---KPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_ENTHI (Triosephosphate isomerase OS=Entamoeba histolytica GN=TPI PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 1.471e-61
Identity = 134/257 (52.14%), Postives = 164/257 (63.81%), Query Frame = 3
Query:   57 KFFVGGNWKCNGTTEEVKKIVS-VLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFH-----VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSAELK 800
            KF VGGNWKCNGT   ++ +   V                     ++  V+  L  + +     V+A+N W K G A+TGE+   MLV+  +P+VILGHSERR I +ESNE V +KV  A+  GLKVIAC+GET  QR A  T +VVAAQ KAI + +S  +W NI+LAYEPVWAIGTGK ATP QAQEVH  +RKW+  N S E+A ATRI YGGSVN ANC ELA + D+DGFLVGGASL   +F  II S   K
Sbjct:    5 KFVVGGNWKCNGTLASIETLTKGVAASVDAELAKKVEVIVGVPFIYIPKVQQILAGEANGANILVSAENAWTKSG-AYTGEVHVGMLVDCQVPYVILGHSERRQIFHESNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKEAWKNIILAYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGGASLDAAKFKTIINSVSEK 260          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 9.535e-61
Identity = 125/248 (50.40%), Postives = 158/248 (63.71%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLR-PDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R FFVGGN+K NG+ E +K IV  LN  +                +L L K SL+ P   VA QN + K  GAFTGE+S   L ++   WVILGHSERR I  ES+E++ DK  YAL  GL VI C+GET+++++AG T+DVV +Q   +  ++  WSN+V+AYEPVWAIGTG  AT   AQ++H E+R +L      + A   RIIYGGSVNG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:    1 MSRTFFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPPFP--YLLLAKESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYALDNGLDVILCIGETIDEKKAGKTLDVVRSQLDPVIAKIKDWSNVVIAYEPVWAIGTGLAATAEDAQQIHHEIRAYLKDKIGAQ-ADKVRIIYGGSVNGKNSGTFKDKSDVDGFLVGGASLKPEFVDIINS 245          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.774e-60
Identity = 118/247 (47.77%), Postives = 155/247 (62.75%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R FF+GGN+K NGT   +K+IV  LN                       V  + +    VAAQN ++K  GAFTGE S E + ++   WVILGHSERR   +E++EF+ DK  +AL  G+KVI C+GETLE+++ G T++VV  Q +A+ D+V  W+N+V+AYEPVWAIGTG  AT   AQ +H  +R++L    S + A   RI+YGGS NG N      + DVDGFLVGGASLKPEF+DII S
Sbjct:    1 MARTFFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHA-VSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGETLEEKQKGITLEVVQRQLQAVLDKVQDWTNVVVAYEPVWAIGTGLAATSDDAQAIHHSIREFLAKKLSKDTAEKIRILYGGSANGKNAVTFKDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_TRYBB (Triosephosphate isomerase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 4.732e-60
Identity = 118/243 (48.56%), Postives = 158/243 (65.02%), Query Frame = 3
Query:   75 NWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSL-RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 794
            NWKCNG+ + + +++ + N                    L + K  L  P F +AAQN  + K GAFTGE+S  +L +  + W++LGHSERR    E+NE V DKVA A++ G  VIAC+GETL++RE+G T  VV  Q  AIA ++  + W+ +V+AYEPVWAIGTGKVATP QAQE H  +R W+ +    ++A   RI+YGGSVNG N + L  Q DV+GFLVGGASLKPEF+DIIK+ +
Sbjct:   11 NWKCNGSQQSLSELIDLFNSTSINHDVQCVVASTFVH--LAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKPEFVDIIKATQ 250          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 4.732e-60
Identity = 115/179 (64.25%), Postives = 137/179 (76.54%), Query Frame = 3
Query:  189 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPD 725
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L+I WVILGHSERR I  ES+E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++A+ RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 8.072e-60
Identity = 117/247 (47.37%), Postives = 156/247 (63.16%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 788
            M R FFVGGN+K NG+ + +K+IV  LN                      +   S  P   V AQN + K  GA+TGE S + + ++   WVILGHSERR   NE +E V +K A+AL +G+ VI C+GETL++++AG T+DVV  Q   + ++V  W+N+V+AYEPVWAIGTG  AT   AQ++H  +R +L   TS ++A A RI++GGS NGAN      + DVDGFLVGGASLKPEF+DII S
Sbjct:    1 MARTFFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAVSLVS-HPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGETLDEKKAGVTLDVVKRQLTPVLEKVKDWTNVVIAYEPVWAIGTGLAATAEDAQDIHAAIRDFLAERTSRDVADAVRILFGGSANGANAASFRDKADVDGFLVGGASLKPEFVDIINS 246          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 6.833e-59
Identity = 112/179 (62.57%), Postives = 134/179 (74.86%), Query Frame = 3
Query:  189 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPD 725
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L+I WVILGHSERR I  ES E + DK+ +AL++GLKVIAC+GETL++REA  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
The following BLAST results are available for this feature:
BLAST of DY258062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CANAL7.800e-6350.00Triosephosphate isomerase OS=Candida albicans GN=T... [more]
TPIS_COPC71.019e-6251.60Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_YEAST1.126e-6148.19Triosephosphate isomerase OS=Saccharomyces cerevis... [more]
TPIS_ENTHI1.471e-6152.14Triosephosphate isomerase OS=Entamoeba histolytica... [more]
TPIS_YARLI9.535e-6150.40Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_KLUMA2.774e-6047.77Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_TRYBB4.732e-6048.56Triosephosphate isomerase, glycosomal OS=Trypanoso... [more]
TPIS_AEDTO4.732e-6064.25Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_ASHGO8.072e-6047.37Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_CULPI6.833e-5962.57Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258062 ID=DY258062; Name=DY258062; organism=Citrus clementina; type=EST; length=1029bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTG
CTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAG
TAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTGCTGATGAAGTATTTAC
TGTTTGTGGATATATAGAATACGTTTTGTATAATTTCAGAATTACTTTTT
GTTTTTGATAAGCGCGACCAACTGAAACCTTTTTTTAACTTTTTTAATTA
TCTTTGTTTCCTAAGTTGTGGAAGTTGAATAATCTTTAAGAATTGGTTAC
CTTGCGCAAGGGAATTGCAAATTCCTCCT
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