DY258062

Overview
NameDY258062
Unique NameDY258062
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1029
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258062_ssr25 microsatellite DY258062_ssr25:25..34. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9910 contig Ccv1_Contig9910:10..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_COLP3 (Triosephosphate isomerase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=tpiA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 9.580e-45
Identity = 107/253 (42.29%), Postives = 146/253 (57.71%), Query Frame = 3
Query:   48 MGRKFFVGGNWKCNGTTEEVKKIVSVLNE---GQXXXXXXXXXXXXXXXXFLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 791
            M R+  V  NWK NG +  V  +VS L +                        +  ++L    HV +QN    + GA+TGE+S  ML NL I +VI+GHSERR I  E++  V  KV  AL+ GL  I C+GE+  +R  G T  V++AQ + + D   +  + ++V+AYEPVWAIGTGK A+   AQE H  +RK+L A  + ++A    ++YGGSVN ANC+EL AQ D+DG L+GGASLK E   II SA
Sbjct:    1 MTRQAIVAANWKMNGDSALVDTMVSGLADIELSSHVDVVICPSFPYLSELNQKIKAANLNEAIHVGSQNVSEHESGAYTGEVSTAMLQNLAINYVIVGHSERRSIFKETSTQVAKKVHAALNAGLTPILCIGESEAERATGETETVLSAQIQPVIDEIGIEKFKDVVIAYEPVWAIGTGKTASSAMAQETHQFIRKFL-AQQNEQVADKVPLLYGGSVNAANCEELFAQTDIDGGLIGGASLKAEQFKIICSA 252          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACHK (Triosephosphate isomerase OS=Bacillus thuringiensis subsp. konkukian GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACCZ (Triosephosphate isomerase OS=Bacillus cereus (strain ZK / E33L) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACCR (Putative triosephosphate isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=tpiA PE=5 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACCE (Triosephosphate isomerase OS=Bacillus cereus GN=tpiA PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACC4 (Triosephosphate isomerase OS=Bacillus cereus (strain B4264) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACC2 (Triosephosphate isomerase OS=Bacillus cereus (strain G9842) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.251e-44
Identity = 111/240 (46.25%), Postives = 136/240 (56.67%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 764
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.634e-44
Identity = 108/249 (43.37%), Postives = 145/249 (58.23%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 788
            RK  V GNWK N T  E   +   L+E                   L  V +++  +   VAA+NC  K+ GA+TGE+SA M+ +    +VILGHSERR   +E+ E +  KV  AL+ GL  I C+GE LE+REAG   +VV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N  N KEL A+P+VDG L+GGASL   +F+ II++
Sbjct:    2 RKNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFAKPNVDGGLIGGASLAVDKFMPIIEA 250          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.134e-44
Identity = 109/247 (44.13%), Postives = 140/247 (56.68%), Query Frame = 3
Query:   66 VGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPD-FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 794
            V GNWK NG+   V ++V+ L   +                +L L K +      H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      + +  +V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRT-ELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of DY258062 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.640e-44
Identity = 111/251 (44.22%), Postives = 142/251 (56.57%), Query Frame = 3
Query:   54 RKFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLG-LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 794
            RK  + GNWK N T  E    V  + +GQ                FL  LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P  F+ ++++ +
Sbjct:    2 RKPIIAGNWKMNKTLSEAVSFVEEV-KGQIPAASAVDAVVCSPALFLERLVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEPASFLGLLEAVK 251          
The following BLAST results are available for this feature:
BLAST of DY258062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_COLP39.580e-4542.29Triosephosphate isomerase OS=Colwellia psychreryth... [more]
TPIS_BACHK1.251e-4446.25Triosephosphate isomerase OS=Bacillus thuringiensi... [more]
TPIS_BACCZ1.251e-4446.25Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACCR1.251e-4446.25Putative triosephosphate isomerase OS=Bacillus cer... [more]
TPIS_BACCE1.251e-4446.25Triosephosphate isomerase OS=Bacillus cereus GN=tp... [more]
TPIS_BACC41.251e-4446.25Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACC21.251e-4446.25Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_PARD81.634e-4443.37Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_KLEPN2.134e-4444.13Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_BACC13.640e-4444.22Triosephosphate isomerase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD11ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258062 ID=DY258062; Name=DY258062; organism=Citrus clementina; type=EST; length=1029bp
GAAACAAATAGAAAATAAAACATAACACACACACGCACTCGTCGAAAATG
GGCAGGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGA
AGAAGTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTT
CTGATGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTG
GTGAAGAGTTCGTTGAGGCCTGATTTTCATGTTGCGGCACAGAATTGCTG
GGTCAAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCG
TCAATTTGGATATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTC
ATTTTGAATGAATCAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACT
TTCTCAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGC
GTGAAGCAGGATCTACTATGGATGTTGTTGCTGCACAAACTAAAGCAATC
GCAGATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGT
GTGGGCTATTGGAACTGGGAAGGTTGCCACTCCAGTGCAGGCTCAAGAAG
TACATTTTGAACTGAGGAAATGGCTTTTTGCAAACACCAGTCCTGAAATT
GCTGCAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTG
CAAGGAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTG
CTTCGTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAG
TAAAATTCTTGAGCTTTATTTCAAGGGCAGTTTGCTGATGAAGTATTTAC
TGTTTGTGGATATATAGAATACGTTTTGTATAATTTCAGAATTACTTTTT
GTTTTTGATAAGCGCGACCAACTGAAACCTTTTTTTAACTTTTTTAATTA
TCTTTGTTTCCTAAGTTGTGGAAGTTGAATAATCTTTAAGAATTGGTTAC
CTTGCGCAAGGGAATTGCAAATTCCTCCT
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