DY258063

Overview
NameDY258063
Unique NameDY258063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4559 contig Ccv1_Contig4559:767..2008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_PYRCJ (Tyrosyl-tRNA synthetase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.211e-25
Identity = 69/187 (36.90%), Postives = 103/187 (55.08%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            G+DQR  ++LAR+  D I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  K+ KAYCPP+ VE NP LE ++   F  ++K   V++R E  GG+     YEEL A Y+EG +HP DLK   ++A+  +L+PV   F        LL+ ++   +TR
Sbjct:  188 GIDQRRAHILARQVADKIRFYPLTVDGKRIKPVALHHRLLPALNISSKPSSKEELSELKMSKSIPQSAIFVHDSPEEIRQKVAKAYCPPREVEYNPVLELLRIAAFREERKTPLVIKRPEKYGGDVEVWKYEELEAMYKEGKIHPADLKAVTAEALAALLEPVYKFF--QGPGAKLLEEMRNIAITR 372          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_CHICK (Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gallus GN=YARS PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.211e-25
Identity = 63/148 (42.57%), Postives = 90/148 (60.81%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFN 444
            G+DQR +   A +Y   +    K I L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  +E N  L +IK+++FP   +FV+ R E  GGNKT+ +YE L  D+ E  +HPGDLK S+  A+NK+L P+R  FN
Sbjct:  185 GVDQRKIFTFAEKYLPSLGYA-KRIHLMNPMVPGLTGS--KMSSSEEDSKIDLLDRKEDVKKKLKKAFCEPGNIENNGVLSFIKHVLFPLKSEFVILREEKWGGNKTYTAYETLEKDFAEQVVHPGDLKNSVEAALNKLLDPIREKFN 329          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIY (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIN (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIM (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIL (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIK (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULIA (Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (strain M.16.27) GN=tyrS PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.887e-25
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE----------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRV 480
            G DQR  ++LAR+  + + +K K + +   +L GLQ GQ                 KMSKS P SAI++ D   +V  KI  AYCP  + E NP L+ +KYIIFP      +ER    GG+  F+ YEEL   Y EG +HP DLK + ++ +N+IL+P+R    +    +++++++
Sbjct:  181 GTDQRKAHMLARDVAEKMGKK-KIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPESAIFVSDSREDVERKIMGAYCPKGVAENNPILQILKYIIFPRYNFVKIERDIRYGGDVEFKDYEELERAYIEGKIHPMDLKKATARRLNEILEPIRKSLERKPEFEEMIQKI 355          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_HALMA (Tyrosyl-tRNA synthetase OS=Haloarcula marismortui GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.432e-25
Identity = 66/148 (44.59%), Postives = 93/148 (62.84%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW----DKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR + +L+RE   D   ++ PI L   +L GL  G  KMS SD +S + + D   EV+ KI +AYCP   VE N  LEY+++++FP        FVVER E  GG+ T+ESY+E+ +D+  G LHP DLKPS + AI+ ++ PVR
Sbjct:  181 GVDQRGIYMLSREILPDHGGES-PICLFAPLLSGLSGG--KMSASDEASKVNLTDSPDEVDEKINQAYCPAGEVEENGVLEYLQHLVFPVLDVRGDSFVVERPEEYGGDLTYESYDEVESDFVSGELHPADLKPSAASAISDVIDPVR 325          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_PYRIL (Tyrosyl-tRNA synthetase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=tyrS PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 8.400e-25
Identity = 70/187 (37.43%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            G+DQR  ++LAR+  D I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  KI KAYCPP+  E NP LE ++   F   +K   V++R    GG+    SYEEL A Y +G +HP DLK + S+A+  +L+PV  +F        LL+ +K   +TR
Sbjct:  188 GIDQRRAHILARQVADKIRFYPLKVDGKRIKPVALHHKLLPALNITSKPSSREELSEMKMSKSIPQSAIFVHDSPDEIRQKIAKAYCPPRDTEYNPVLELLRISAFREKRKTPLVIKRPAQYGGDLEVWSYEELEALYRDGRVHPADLKTATSEALITLLEPVYRYF--QGPGAKLLEEMKNITITR 372          
The following BLAST results are available for this feature:
BLAST of DY258063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_PYRCJ2.211e-2536.90Tyrosyl-tRNA synthetase OS=Pyrobaculum calidifonti... [more]
SYYC_CHICK2.211e-2542.57Tyrosyl-tRNA synthetase, cytoplasmic OS=Gallus gal... [more]
SYY_SULIY2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIN2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIM2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIL2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIK2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_SULIA2.887e-2536.36Tyrosyl-tRNA synthetase OS=Sulfolobus islandicus (... [more]
SYY_HALMA6.432e-2544.59Tyrosyl-tRNA synthetase OS=Haloarcula marismortui ... [more]
SYY_PYRIL8.400e-2537.43Tyrosyl-tRNA synthetase OS=Pyrobaculum islandicum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258063 ID=DY258063; Name=DY258063; organism=Citrus clementina; type=EST; length=1242bp
GGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGATGA
CATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTCCTG
GACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCTGCC
ATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAAAGC
ATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACATAA
AATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGCGAA
GCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGCTGA
TTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGTCTA
AAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAGAAT
GCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTACCAG
GTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCTAAC
AGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTACGA
TCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATAATT
TATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAACAAATATTCATAAA
AAAAAAACCTTAACCAAATAAAAAAAAATAACAACAACAATAAACCAACA
TTTAAAACCAATAAAAAAAGAAAAAAAGTAAGAGAAAAAATATTACCCCC
CCACTAACAGTTTTTTTGGGGCCCCCCCCCCCCCCCAATTAAATCAAAAA
AAAAAAAAAAATTATAATGGGGCGCGCCCAATTTAAAACCTCATTGGGAA
AAATTCCCCCAAAAAGGAGAGGATTAAAAAAAAATTCCGGGGGGCCCTTT
TTTTACCACACGCGGGAAGGGGGAAAAAACACCGGGGTGTTCCCCACAAT
ATTAATACCCCTTGGAGCACCCCCCCCCCCTTTTTCCCCGGGGGGGGGAA
AAAGAAAAAAAAAAACCCCCCCCCCCCCCATCCCCCCCCTCTCCCCAAGA
GTTGTGCGCCGCGCCGGGAAGGAGGGAGAAGAAAGAGATAATTATAAACC
ACTAAAATTATTTTTTTTGAAAAAAATTCCCCCCCTATAAATTTTTTTTT
TTAATAAACACCCCCCTCCTATTTTTTTCACCAAAAAAAACC
back to top