DY258063

Overview
NameDY258063
Unique NameDY258063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4559 contig Ccv1_Contig4559:767..2008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_PYRAR (Tyrosyl-tRNA synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=tyrS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.097e-24
Identity = 70/187 (37.43%), Postives = 101/187 (54.01%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            G+DQR  ++LARE    I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  KI KAYCPP+ VE NP LE ++   F  ++K  FV+ R    GG+    SY+EL   Y EG +HP DLK + ++A+  +L+PV   F        LL+ +K   +TR
Sbjct:  188 GIDQRRAHILAREVAHKIRFYPLEVDGKRVKPVALHHRLLPALNISAKPASKEELSELKMSKSIPQSAIFVHDSPEEIKQKIAKAYCPPREVEYNPVLELLRVSAFREERKTPFVIRRPAQYGGDVEVWSYQELEGLYREGKIHPADLKNAAAEALAGLLEPVYKFF--QGPGAKLLEEMKNITITR 372          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_RAT (Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.097e-24
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNA 453
            G+DQR +   A +Y   +   +K + L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  VE N  L ++K+++FP   +FV+ R E  GGNKT+  Y+EL  D+    +HPGDLK S+  A+NK+L P+R  FN  A
Sbjct:  185 GIDQRKIFTFAEKYLPTLGY-SKRVHLMNPMVPGLTGS--KMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFVKHVLFPLKSEFVILRDEKWGGNKTYTIYQELEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPA 332          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY1_PYRAE (Tyrosyl-tRNA synthetase 1 OS=Pyrobaculum aerophilum GN=tyrS1 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.871e-24
Identity = 67/187 (35.83%), Postives = 102/187 (54.55%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIK--------RKNKPIILSHHMLPGL----------QQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKK--FVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            G+DQR  ++LAR+  D I+        ++ KP+ L H +LP L          +  + KMSKS P SAI++ D   E+  KI KAYCPP+  E NP LE +    F  ++K  F+++R    GG+    +YEE+   Y EG +HP DLK + ++A+  IL+P+  +F        LL+ +K   +TR
Sbjct:  188 GVDQRRAHILARQVADKIRFYPLEVGGKRVKPVALHHKLLPALNISTKPSNKEELSEMKMSKSVPQSAIFIHDSPEEIRQKISKAYCPPRETEYNPVLELLHISAFREERKTPFIIKRPPQYGGDIEVWTYEEVERLYREGKIHPADLKNATAEALINILEPIYKYF--QGPGAKLLQEMKNITITR 372          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_PONAB (Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=YARS PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 3.192e-24
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNA 453
            G+DQR +   A +Y   +   +K + L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  VE N  L +IK+++FP   +FV+ R E  GGNKT+ +Y +L  D+    +HPGDLK S+  A+NK+L P+R  FN  A
Sbjct:  185 GVDQRKIFTFAEKYLPALGY-SKRVHLMNPMVPGLTGS--KMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDERWGGNKTYTAYMDLEKDFAAEVVHPGDLKNSVDVALNKLLDPIREKFNTPA 332          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_HUMAN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=YARS PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 3.192e-24
Identity = 62/151 (41.06%), Postives = 91/151 (60.26%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNA 453
            G+DQR +   A +Y   +   +K + L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  VE N  L +IK+++FP   +FV+ R E  GGNKT+ +Y +L  D+    +HPGDLK S+  A+NK+L P+R  FN  A
Sbjct:  185 GIDQRKIFTFAEKYLPALGY-SKRVHLMNPMVPGLTGS--KMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTAYVDLEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPA 332          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_MOUSE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Yars PE=2 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 4.169e-24
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNA 453
            G+DQR +   A +Y   +   +K + L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  VE N  L +IK+++FP   +FV+ R E  GGNKT+  Y EL  D+    +HPGDLK S+  A+NK+L P+R  FN  A
Sbjct:  185 GVDQRKIFTFAEKYLPALGY-SKRVHLMNPMVPGLTGS--KMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLSFIKHVLFPLKSEFVILRDEKWGGNKTYTVYLELEKDFAAEVVHPGDLKNSVEVALNKLLDPIREKFNTPA 332          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_BOVIN (Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=YARS PE=2 SV=4)

HSP 1 Score: 112.849 bits (281), Expect = 4.169e-24
Identity = 62/151 (41.06%), Postives = 92/151 (60.93%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNA 453
            G+DQR +   A +Y   +   +K I L + M+PGL     KMS S+  S I + D + +V  K+KKA+C P  VE N  L +I++++FP   +FV+ R E  GGNKT+ +Y +L  D+ +  +HPGDLK S+  A+NK+L P+R  FN  A
Sbjct:  185 GVDQRKIFTFAEKYLPALGY-SKRIHLMNPMVPGLTGS--KMSSSEEESKIDLLDRKEDVKKKLKKAFCEPGNVENNGVLAFIRHVLFPLKSEFVILRDEKWGGNKTYTAYLDLEKDFADEVVHPGDLKNSVEVALNKLLDPIREKFNTPA 332          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_AERPE (Tyrosyl-tRNA synthetase OS=Aeropyrum pernix GN=tyrS PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.584e-23
Identity = 67/183 (36.61%), Postives = 108/183 (59.02%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQ--------QGQ-------EKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK-KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            GMDQR  ++LAR+  + + RK KP+ +   ++  LQ        QG+        KMSKS P +A+++ D + ++  KI+KAYCP K V+GNP LE  +YI+F  D     V+R    GG   + SYEEL  DY +G LHP DLK ++++++ ++++P+R     +   +  L+ ++G +VTR
Sbjct:  184 GMDQRKAHMLARDVAEKLGRK-KPVAIHTPIISSLQGPGRMEASQGEIDDVLAEVKMSKSKPETAVFVVDSDDDIRRKIRKAYCPAKQVQGNPVLEIARYILFARDGFTLRVDRPAKYGGPVEYTSYEELERDYTDGRLHPLDLKNAVAESLIEVVRPIRGAVLGDPAMKRALEAIEG-KVTR 364          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULTO (Tyrosyl-tRNA synthetase OS=Sulfolobus tokodaii GN=tyrS PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 6.020e-23
Identity = 67/158 (42.41%), Postives = 90/158 (56.96%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE-------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFV-VERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G DQR  ++LAR+  D + +K K I +   +L GLQ GQ              KMSKS P +AI++ D    V  K++ AYCP  +V  NP L+  KYIIF  D   + VER    GG+  F+SYEEL   Y EG LHP DLK + ++ +N+IL P+R
Sbjct:  182 GTDQRKAHMLARDVSDKLGKK-KVIAIHTPLLIGLQGGQRMEGVEEDDYLASVKMSKSKPETAIFVHDPPEVVEAKLRSAYCPKGVVIDNPVLQINKYIIFAKDNATLKVERDIKYGGDIEFKSYEELEKIYSEGKLHPLDLKLATARKLNEILDPIR 338          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_DANRE (Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio rerio GN=yars PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 7.863e-23
Identity = 55/147 (37.41%), Postives = 88/147 (59.86%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHF 441
            G+DQR +  LA +Y   +    +  +++  M+PGL     KMS S+  S I + D+  +V  K+KKA+C P  VE N  L ++K+++FP   +FV++R    GG+K +  +EE+  D+    +HPGDLK S+  A+NK+L P+R  F
Sbjct:  185 GVDQRKIFTLAEKYLPSLGYTKRSHLMNP-MVPGLTGS--KMSSSEEESKIDLLDKNQDVKKKLKKAFCEPGNVENNGVLSFVKHVLFPLHSEFVIKRDPKFGGDKVYTDFEEVEKDFAAEQIHPGDLKASVELALNKLLDPIRKKF 328          
The following BLAST results are available for this feature:
BLAST of DY258063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_PYRAR1.097e-2437.43Tyrosyl-tRNA synthetase OS=Pyrobaculum arsenaticum... [more]
SYYC_RAT1.097e-2441.06Tyrosyl-tRNA synthetase, cytoplasmic OS=Rattus nor... [more]
SYY1_PYRAE1.871e-2435.83Tyrosyl-tRNA synthetase 1 OS=Pyrobaculum aerophilu... [more]
SYYC_PONAB3.192e-2441.06Tyrosyl-tRNA synthetase, cytoplasmic OS=Pongo abel... [more]
SYYC_HUMAN3.192e-2441.06Tyrosyl-tRNA synthetase, cytoplasmic OS=Homo sapie... [more]
SYYC_MOUSE4.169e-2441.72Tyrosyl-tRNA synthetase, cytoplasmic OS=Mus muscul... [more]
SYYC_BOVIN4.169e-2441.06Tyrosyl-tRNA synthetase, cytoplasmic OS=Bos taurus... [more]
SYY_AERPE1.584e-2336.61Tyrosyl-tRNA synthetase OS=Aeropyrum pernix GN=tyr... [more]
SYY_SULTO6.020e-2342.41Tyrosyl-tRNA synthetase OS=Sulfolobus tokodaii GN=... [more]
SYYC_DANRE7.863e-2337.41Tyrosyl-tRNA synthetase, cytoplasmic OS=Danio reri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258063 ID=DY258063; Name=DY258063; organism=Citrus clementina; type=EST; length=1242bp
GGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGATGA
CATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTCCTG
GACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCTGCC
ATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAAAGC
ATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACATAA
AATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGCGAA
GCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGCTGA
TTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGTCTA
AAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAGAAT
GCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTACCAG
GTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCTAAC
AGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTACGA
TCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATAATT
TATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAACAAATATTCATAAA
AAAAAAACCTTAACCAAATAAAAAAAAATAACAACAACAATAAACCAACA
TTTAAAACCAATAAAAAAAGAAAAAAAGTAAGAGAAAAAATATTACCCCC
CCACTAACAGTTTTTTTGGGGCCCCCCCCCCCCCCCAATTAAATCAAAAA
AAAAAAAAAAATTATAATGGGGCGCGCCCAATTTAAAACCTCATTGGGAA
AAATTCCCCCAAAAAGGAGAGGATTAAAAAAAAATTCCGGGGGGCCCTTT
TTTTACCACACGCGGGAAGGGGGAAAAAACACCGGGGTGTTCCCCACAAT
ATTAATACCCCTTGGAGCACCCCCCCCCCCTTTTTCCCCGGGGGGGGGAA
AAAGAAAAAAAAAAACCCCCCCCCCCCCCATCCCCCCCCTCTCCCCAAGA
GTTGTGCGCCGCGCCGGGAAGGAGGGAGAAGAAAGAGATAATTATAAACC
ACTAAAATTATTTTTTTTGAAAAAAATTCCCCCCCTATAAATTTTTTTTT
TTAATAAACACCCCCCTCCTATTTTTTTCACCAAAAAAAACC
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