DY258063

Overview
NameDY258063
Unique NameDY258063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4559 contig Ccv1_Contig4559:767..2008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_NATPD (Tyrosyl-tRNA synthetase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=tyrS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.027e-22
Identity = 63/148 (42.57%), Postives = 89/148 (60.14%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPW----DKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR + +LARE   D    +KP  +   +L GL  G  KMS S+  S I + D+   ++ KI  AYCP    E N  LEY++Y++FP     D  FVVER E  GG+  + +Y+EL AD+  G LHP DLKP+ + AI++++ PVR
Sbjct:  182 GIDQRGIYMLAREQLPD-HGYDKPACVFAPLLSGLSGG--KMSASEAGSKINLTDDGEAIDEKIGGAYCPAGETEENGVLEYLEYLVFPVFDQRDTSFVVERPEKYGGDLEYGTYDELEADFVSGELHPADLKPAAAAAIDEVVAPVR 326          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_SULAC (Tyrosyl-tRNA synthetase OS=Sulfolobus acidocaldarius GN=tyrS PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.902e-22
Identity = 65/177 (36.72%), Postives = 94/177 (53.11%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE---------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIF-PWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVK 483
            G DQR  ++LAR+  + ++RK K I +   +L GLQ GQ                KMSKS P +AI++ D    V  K+K +YCP  +V  NP L+  KYIIF        +ER    GG+   +SYEEL   + EG LHP DLK + ++ +N IL P+R   +  +   DL+  ++
Sbjct:  181 GTDQRKAHMLARDVAEKLQRK-KVIAIHTPLLVGLQGGQRMNTEGLEEDDYLATIKMSKSKPETAIFIHDSPELVESKLKNSYCPKGVVNDNPVLQINKYIIFGEQGVTLKIERDTKYGGDIEIKSYEELERIFIEGKLHPLDLKLATARKLNDILDPIRKRISSKSQFVDLISSIE 356          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_MIMIV (Tyrosyl-tRNA synthetase OS=Acanthamoeba polyphaga mimivirus GN=YARS PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.902e-22
Identity = 66/164 (40.24%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYR 492
            G+DQR +N+LA EY +D   K  PI LSHHML  L   ++KMSKSDP  AI+M+D E EV+ KI +AYC  +  + NP  EYIKY++  W           N   K +   E +  D+   +++  +LK  ++  IN I+  VR HF K     +LL  VK Y+
Sbjct:  191 GIDQRKVNMLAIEYANDRGLKI-PISLSHHMLMSLSGPKKKMSKSDPQGAIFMDDTEQEVSEKISRAYCTDETFD-NPIFEYIKYLLLRW-------FGTLNLCGKIYTDIESIQEDF--SSMNKRELKTDVANYINTIIDLVREHF-KKPELSELLSNVKSYQ 342          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_YEAST (Tyrosyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=TYS1 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 6.656e-22
Identity = 65/173 (37.57%), Postives = 100/173 (57.80%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDK--------KFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRV 495
            G+DQR + VLA E    +  K +  +++  M+PGL QG  KMS SDP+S I + +E  +V  KI  A+C P  VE N  L +++Y+I P  +        +F ++R E  GG  T++S+EE+   ++E  L P DLK  ++ AIN++L+P+R  F  N   Q+  +  KGY V
Sbjct:  189 GVDQRKIFVLAEENLPSLGYKKRAHLMNP-MVPGLAQGG-KMSASDPNSKIDLLEEPKQVKKKINSAFCSPGNVEENGLLSFVQYVIAPIQELKFGTNHFEFFIDRPEKFGGPITYKSFEEMKLAFKEEKLSPPDLKIGVADAINELLEPIRQEFANNKEFQEASE--KGYPV 357          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METHJ (Tyrosyl-tRNA synthetase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tyrS PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.693e-22
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNH 438
            G+DQR +++LAREY   +  KN P  +  H+ P LQ    K   S   + I + + E ++  K+KKA+CPP+ VE NP L+ +++ IFP      +ER E  GGN+TF SYEE+   Y +G +HP DLK ++++++  IL PVR +
Sbjct:  171 GIDQRKIHMLAREY---LPSKNYPSPVCIHV-PILQGLDGKKMSSSQGNYISVAESEEDIRKKMKKAFCPPE-VEDNPVLQVLQHHIFPRLDTVTIERPEKFGGNRTFGSYEEMEQAYAKGEIHPADLKTAVAESLITILAPVREY 311          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METKA (Tyrosyl-tRNA synthetase OS=Methanopyrus kandleri GN=tyrS PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.635e-21
Identity = 58/144 (40.28%), Postives = 89/144 (61.81%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G++QR +++LAR+    +   + P  L   ++ GL  G EKMS S  ++ I ++DE   +  K++KAYCP +  EGNP LE  +Y IF    +  +ER E  GG+ T+ SYEEL  D+ +G LHP DLK + +  +++IL+PVR
Sbjct:  177 GLEQRKIHMLARDVLPKLGY-DSPTCLHTPIIHGLD-GDEKMSSSK-NNFIAVDDEPEVIREKLRKAYCPAREAEGNPILEIYRYFIFREYDEVTIERPEKYGGDVTYTSYEELERDFVDGELHPLDLKENAAGYLSEILKPVR 317          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_PICTO (Tyrosyl-tRNA synthetase OS=Picrophilus torridus GN=tyrS PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.639e-20
Identity = 59/150 (39.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQ-----QGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP-WDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GMDQR  ++LAR+  + +  K KP+ +   +L  L+        +KMSKS+P SAI+M D   ++  KIK AYCP K V GNP ++ +KYIIFP ++ K  ++R E+ GG    +  + L   Y  G +HP DLK ++ + +  I+ PVR
Sbjct:  176 GMDQRHAHMLARDIAERMNIK-KPVSVHTPLLSSLKGSGRMDSFKKMSKSEPDSAIFMTDSNDDIKRKIKNAYCPMKEVNGNPVIDILKYIIFPYYNDKISIKRPESKGGPVDVD-MDSLTRMYISGEIHPVDLKNAVGELLCDIIGPVR 323          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_HALSA (Tyrosyl-tRNA synthetase OS=Halobacterium salinarium GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.230e-20
Identity = 56/153 (36.60%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP----PKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNK 447
            GMDQR +++LARE    +  + +P+ L   ++  L  G  KMS S+    I MED  A++  K+  A+CP    P+    NP LE  +Y +FP   + VV+R +  GG+  +ESYE+L  D E G LHP D K +L+ A++++++P R    +
Sbjct:  173 GMDQRKVHMLAREELPSVGYEKRPV-LHTPIIGDLGSGDGKMSSSE-GVTISMEDSTADIEEKVTGAFCPQTRDPEGETVNPVLELFQYHVFPRFDEVVVQRPDEYGGDLVYESYEDLADDLESGELHPADAKGALAAALDELIEPGRQRLRE 323          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_HALS3 (Tyrosyl-tRNA synthetase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 6.230e-20
Identity = 56/153 (36.60%), Postives = 88/153 (57.52%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP----PKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNK 447
            GMDQR +++LARE    +  + +P+ L   ++  L  G  KMS S+    I MED  A++  K+  A+CP    P+    NP LE  +Y +FP   + VV+R +  GG+  +ESYE+L  D E G LHP D K +L+ A++++++P R    +
Sbjct:  173 GMDQRKVHMLAREELPSVGYEKRPV-LHTPIIGDLGSGDGKMSSSE-GVTISMEDSTADIEEKVTGAFCPQTRDPEGETVNPVLELFQYHVFPRFDEVVVQRPDEYGGDLVYESYEDLADDLESGELHPADAKGALAAALDELIEPGRQRLRE 323          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_THEAC (Tyrosyl-tRNA synthetase OS=Thermoplasma acidophilum GN=tyrS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.136e-20
Identity = 58/152 (38.16%), Postives = 85/152 (55.92%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNK--TFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GMDQR  ++LAR+  + +KRK   ++  H  L    +G        KMSKSDP+SAI + D   ++  KI  AYCPP+ VEGNP  E +KYII P+  K +    E +G N     +S E     Y+ G + P DLK  ++  +N++++P R
Sbjct:  175 GMDQRHAHMLARDIAEKMKRKK--VVSVHGFLLSSLKGNARMDNFVKMSKSDPNSAILVTDHMEDIERKINAAYCPPQQVEGNPVAEIMKYIIIPYYGKSI----EIHGSNGVINLDSVENFDQAYQRGEIQPADLKHKVATILNEMVEPAR 320          
The following BLAST results are available for this feature:
BLAST of DY258063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_NATPD1.027e-2242.57Tyrosyl-tRNA synthetase OS=Natronomonas pharaonis ... [more]
SYY_SULAC3.902e-2236.72Tyrosyl-tRNA synthetase OS=Sulfolobus acidocaldari... [more]
SYY_MIMIV3.902e-2240.24Tyrosyl-tRNA synthetase OS=Acanthamoeba polyphaga ... [more]
SYYC_YEAST6.656e-2237.57Tyrosyl-tRNA synthetase, cytoplasmic OS=Saccharomy... [more]
SYY_METHJ8.693e-2240.41Tyrosyl-tRNA synthetase OS=Methanospirillum hungat... [more]
SYY_METKA5.635e-2140.28Tyrosyl-tRNA synthetase OS=Methanopyrus kandleri G... [more]
SYY_PICTO1.639e-2039.33Tyrosyl-tRNA synthetase OS=Picrophilus torridus GN... [more]
SYY_HALSA6.230e-2036.60Tyrosyl-tRNA synthetase OS=Halobacterium salinariu... [more]
SYY_HALS36.230e-2036.60Tyrosyl-tRNA synthetase OS=Halobacterium salinarum... [more]
SYY_THEAC8.136e-2038.16Tyrosyl-tRNA synthetase OS=Thermoplasma acidophilu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258063 ID=DY258063; Name=DY258063; organism=Citrus clementina; type=EST; length=1242bp
GGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGATGA
CATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTCCTG
GACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCTGCC
ATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAAAGC
ATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACATAA
AATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGCGAA
GCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGCTGA
TTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGTCTA
AAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAGAAT
GCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTACCAG
GTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCTAAC
AGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTACGA
TCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATAATT
TATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAACAAATATTCATAAA
AAAAAAACCTTAACCAAATAAAAAAAAATAACAACAACAATAAACCAACA
TTTAAAACCAATAAAAAAAGAAAAAAAGTAAGAGAAAAAATATTACCCCC
CCACTAACAGTTTTTTTGGGGCCCCCCCCCCCCCCCAATTAAATCAAAAA
AAAAAAAAAAATTATAATGGGGCGCGCCCAATTTAAAACCTCATTGGGAA
AAATTCCCCCAAAAAGGAGAGGATTAAAAAAAAATTCCGGGGGGCCCTTT
TTTTACCACACGCGGGAAGGGGGAAAAAACACCGGGGTGTTCCCCACAAT
ATTAATACCCCTTGGAGCACCCCCCCCCCCTTTTTCCCCGGGGGGGGGAA
AAAGAAAAAAAAAAACCCCCCCCCCCCCCATCCCCCCCCTCTCCCCAAGA
GTTGTGCGCCGCGCCGGGAAGGAGGGAGAAGAAAGAGATAATTATAAACC
ACTAAAATTATTTTTTTTGAAAAAAATTCCCCCCCTATAAATTTTTTTTT
TTAATAAACACCCCCCTCCTATTTTTTTCACCAAAAAAAACC
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