DY258063

Overview
NameDY258063
Unique NameDY258063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4559 contig Ccv1_Contig4559:767..2008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_ARCFU (Tyrosyl-tRNA synthetase OS=Archaeoglobus fulgidus GN=tyrS PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.063e-19
Identity = 60/144 (41.67%), Postives = 85/144 (59.03%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR +++LARE    +   + P+ L   +L GL    +KMS S   + I + D   EV  KI+KAYCP  +VE NP L+  KY I P   K VVER    GG+  + S+EEL  D++ G LHP DLK +++K +N +L+  R
Sbjct:  177 GIDQRKIHMLARENLPRLGYSS-PVCLHTPILVGLDG--QKMSSSK-GNYISVRDPPEEVERKIRKAYCPAGVVEENPILDIAKYHILPRFGKIVVERDAKFGGDVEYASFEELAEDFKSGQLHPLDLKIAVAKYLNMLLEDAR 316          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METBU (Tyrosyl-tRNA synthetase OS=Methanococcoides burtonii (strain DSM 6242) GN=tyrS PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.388e-19
Identity = 60/145 (41.38%), Postives = 88/145 (60.69%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRN 435
            G+DQR +++LARE    +  K  P+ +   +L GL     KMS S+  + I ++D+EA +  K KKA+CP + +E NP LE  KY I P   + V ER E  GG+   +SY EL   + +G+LHP DLK   +K +N+IL+PVR+
Sbjct:  174 GIDQRKIHMLAREGLPGLGFK-APLCIHTPILLGLDG--TKMSSSN-ENYISVDDDEAALKKKFKKAFCPAEDIENNPVLELFKYHITPRYDEMVFERPEKFGGDLVCKSYAELEKVFADGSLHPMDLKNGAAKYLNEILEPVRS 314          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METJA (Tyrosyl-tRNA synthetase OS=Methanocaldococcus jannaschii GN=tyrS PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.813e-19
Identity = 57/144 (39.58%), Postives = 87/144 (60.42%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GM+QR +++LARE         K + + + +L GL  G+ KMS S   + I ++D   E+  KIKKAYCP  +VEGNP +E  KY +   +    ++R E  GG+ T  SYEEL + ++   LHP DLK ++++ + KIL+P+R
Sbjct:  170 GMEQRKIHMLARELLP-----KKVVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPIMEIAKYFL---EYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIR 303          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_THEVO (Tyrosyl-tRNA synthetase OS=Thermoplasma volcanium GN=tyrS PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.888e-19
Identity = 51/149 (34.23%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE-----KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GMDQR  ++LAR+  D +K K K + +  ++L  L+         KMSKSDP+SAI + DE  ++  K+  A+CPP+ V+GNP  E +KY++ P+  + ++   E   GN   E+ ++   DY  G + P +LK ++   ++++++P R
Sbjct:  174 GMDQRHAHMLARDIADKMKVK-KAVSVHGYLLSSLKGNTRMDNFVKMSKSDPNSAILINDEYKDIERKVNAAFCPPEKVDGNPLAEIMKYVLIPYYGRDII--IEKPSGNVRIENVDQFQNDYISGKIAPTELKKAMIPILDEMIEPAR 319          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METMA (Tyrosyl-tRNA synthetase OS=Methanosarcina mazei GN=tyrS PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.175e-18
Identity = 59/144 (40.97%), Postives = 83/144 (57.64%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR +++LARE    +  +  PI +   +L GL  G +  S  D  + I ++D E E+  K KKA+C    VE NP L   +Y IFP  +  V+ER E  GGN  + SY E+ + + E  +HP DLK S +K IN+IL PVR
Sbjct:  174 GIDQRKIHMLARENLKSLGFET-PICIHTPILLGLD-GTKMASSKD--NFISVDDTEEEIYRKFKKAFCKMGDVEENPILALFRYHIFPRYETIVIERPEKFGGNLVYNSYSEMESGFAEEKVHPMDLKNSAAKYINEILDPVR 313          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METBF (Tyrosyl-tRNA synthetase OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tyrS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.534e-18
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR +++LARE   ++  +  PI +   +L GL   +   SK +    I ++D E E+  K+KKAYC     E NP L   +Y IFP  +  V+ER E  GGN T+ SYEE+   +   ++HP DLK S +K IN+IL PVR
Sbjct:  174 GIDQRKIHMLARENLKNLGFET-PICIHTPILLGLDGTKMASSKEN---FISVDDTEEEIYRKLKKAYCKIGDTEENPILALFRYHIFPRYETIVIERPEKFGGNITYTSYEEMENAFVAESVHPMDLKNSAAKYINEILDPVR 313          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_NANEQ (Tyrosyl-tRNA synthetase OS=Nanoarchaeum equitans GN=tyrS PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.004e-18
Identity = 58/191 (30.37%), Postives = 97/191 (50.79%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQE------------------------KMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKRVKGYRVTR 501
            G+DQR  +V+A E  D    K  PI + HH+L G+   +                         KMSKS P +AI++ D   ++  KI+KAYCP   +E NP +E ++Y+I+P  K+ +V  ++       F++ E+L   Y +  +HP DLK  +++ + +IL+P R +F         L+ +K  ++TR
Sbjct:  189 GIDQRKAHVIAIEVSDAFGYK--PIAVHHHLLLGMHIDENIRQKLLEAKKTNNRELFEDSVIDIKMSKSKPETAIFIHDTPEDIRRKIRKAYCPIGEIELNPIIELVEYVIYPILKEPIVIENKKTHQTMEFDNVEQLKEAYAKKQIHPLDLKEYVAEKLIEILEPARKYF-LEGKGNKYLEELKNLQITR 376          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METMP (Tyrosyl-tRNA synthetase OS=Methanococcus maripaludis GN=tyrS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.616e-18
Identity = 60/150 (40.00%), Postives = 90/150 (60.00%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYII-FPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNK 447
            GM+QR +++L+RE    +  K  P+ + + +L GL  G+ KMS S   + I ++D+EA +  K+K A+CP K V GNP LE  KY + +P      V+R E  GG+   ESYE L   + EG LHP D+K  +S+ + +IL+P+R   NK
Sbjct:  178 GMEQRKIHMLSREILPSMGYK-APVCIHNPVLTGLD-GEGKMSSSK-GNFIAVDDDEATIKKKMKNAFCPMKEVSGNPVLEIAKYYLKYP----ATVKRPEKFGGDLVLESYEALENAFVEG-LHPMDVKNLVSEQLIEILRPIREKMNK 319          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_SCHPO (Tyrosyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=tys1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 7.616e-18
Identity = 57/164 (34.76%), Postives = 92/164 (56.10%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSA-IYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFP-----WDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLK 474
            G+DQR + V+A E    +  K +  +++  M+P L  G  KMS S  ++A I + D+   VN KI+ A+C P +VE N CL ++KY+ FP      + +FV++R E  GG   F++YEE+   Y++  L P DLK  L  ++N +L  V+    +  +   +LK
Sbjct:  183 GVDQRKIFVMAEEVLPVLGYKKRGHLMNP-MVPSLAGG--KMSSSAAANAKIDILDDPKTVNKKIRSAFCEPGVVEENGCLAFLKYVSFPAMELRGETEFVIDRPEQFGGRMVFKTYEEVEKAYKDLTLSPQDLKLGLESSVNTLLAGVQEQLKQYPDLDSILK 343          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METMJ (Tyrosyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=tyrS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 9.946e-18
Identity = 54/146 (36.99%), Postives = 85/146 (58.22%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNH 438
            G+DQR +++LARE+   I     P+ +   ++ GL    +KMS S   + I + D E ++  K+KKA+CPP+ VE NP LE ++Y +FP      + R E  GG++ F +YE+L   Y  G +HP DLK + +  +  IL PV ++
Sbjct:  171 GIDQRKIHMLAREHLPSIGYP-APVCIHTPIINGLDG--KKMSSS-AGNVISVADSEEDIKKKMKKAFCPPE-VENNPVLEILRYHVFPRAGAVAIRRPEKFGGDREFAAYEDLERAYAAGEIHPLDLKNAAAAHLIDILAPVHDY 311          
The following BLAST results are available for this feature:
BLAST of DY258063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_ARCFU1.063e-1941.67Tyrosyl-tRNA synthetase OS=Archaeoglobus fulgidus ... [more]
SYY_METBU1.388e-1941.38Tyrosyl-tRNA synthetase OS=Methanococcoides burton... [more]
SYY_METJA1.813e-1939.58Tyrosyl-tRNA synthetase OS=Methanocaldococcus jann... [more]
SYY_THEVO6.888e-1934.23Tyrosyl-tRNA synthetase OS=Thermoplasma volcanium ... [more]
SYY_METMA1.175e-1840.97Tyrosyl-tRNA synthetase OS=Methanosarcina mazei GN... [more]
SYY_METBF1.534e-1840.97Tyrosyl-tRNA synthetase OS=Methanosarcina barkeri ... [more]
SYY_NANEQ2.004e-1830.37Tyrosyl-tRNA synthetase OS=Nanoarchaeum equitans G... [more]
SYY_METMP7.616e-1840.00Tyrosyl-tRNA synthetase OS=Methanococcus maripalud... [more]
SYYC_SCHPO7.616e-1834.76Tyrosyl-tRNA synthetase, cytoplasmic OS=Schizosacc... [more]
SYY_METMJ9.946e-1836.99Tyrosyl-tRNA synthetase OS=Methanoculleus marisnig... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258063 ID=DY258063; Name=DY258063; organism=Citrus clementina; type=EST; length=1242bp
GGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGATGA
CATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTCCTG
GACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCTGCC
ATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAAAGC
ATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACATAA
AATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGCGAA
GCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGCTGA
TTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGTCTA
AAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAGAAT
GCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTACCAG
GTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCTAAC
AGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTACGA
TCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATAATT
TATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAACAAATATTCATAAA
AAAAAAACCTTAACCAAATAAAAAAAAATAACAACAACAATAAACCAACA
TTTAAAACCAATAAAAAAAGAAAAAAAGTAAGAGAAAAAATATTACCCCC
CCACTAACAGTTTTTTTGGGGCCCCCCCCCCCCCCCAATTAAATCAAAAA
AAAAAAAAAAATTATAATGGGGCGCGCCCAATTTAAAACCTCATTGGGAA
AAATTCCCCCAAAAAGGAGAGGATTAAAAAAAAATTCCGGGGGGCCCTTT
TTTTACCACACGCGGGAAGGGGGAAAAAACACCGGGGTGTTCCCCACAAT
ATTAATACCCCTTGGAGCACCCCCCCCCCCTTTTTCCCCGGGGGGGGGAA
AAAGAAAAAAAAAAACCCCCCCCCCCCCCATCCCCCCCCTCTCCCCAAGA
GTTGTGCGCCGCGCCGGGAAGGAGGGAGAAGAAAGAGATAATTATAAACC
ACTAAAATTATTTTTTTTGAAAAAAATTCCCCCCCTATAAATTTTTTTTT
TTAATAAACACCCCCCTCCTATTTTTTTCACCAAAAAAAACC
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