DY258063

Overview
NameDY258063
Unique NameDY258063
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4559 contig Ccv1_Contig4559:767..2008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METLZ (Tyrosyl-tRNA synthetase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.697e-17
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKIL 420
            G+DQR +++LARE+   +  K  P+ +   ++ GL    EKMS S   + + + D   E+  K+KKA+CPP+  EGNP L+  +Y +FP      + R E  GG+  F SY EL A Y  G +HP DLK +   A+ ++L
Sbjct:  171 GIDQRKIHMLAREHLPTLGYK-PPVCIHTPIVNGLDG--EKMSSSK-GNVVSVADSPEEIKKKMKKAFCPPE-TEGNPILQIFRYNVFPRMDTIAIRRPEKFGGDLEFHSYAELEAAYAGGKIHPMDLKAACGDALTELL 305          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_HALLT (Tyrosyl-tRNA synthetase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=tyrS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.697e-17
Identity = 55/153 (35.95%), Postives = 85/153 (55.56%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCP----PKIVEG-----NPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GM+QR +++LAR+    I R+  P  L   ++  L  G+ KMS S+    I MED   ++  K+  AYCP    P+  +      NP L+  +Y +FP     VVER E  GG+  ++SY+ L A+ E G LHP D K +L++ +N+++ P R
Sbjct:  173 GMEQRKVHMLARDVLPSIDRE-PPTSLHTPLIADLGTGRGKMSSSE-GVTISMEDSREDIESKVNDAYCPRTADPEPTDDGQSRENPVLQVFEYHVFPRFDTVVVERPEEYGGDLEYDSYDALEAELESGELHPADAKGALAEYLNRLIAPGR 323          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METST (Tyrosyl-tRNA synthetase OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.420e-17
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKN 450
            GM+QR +++LARE    +  +  P +  H  L     G +KMS S   + I ++D   E+  KI K++CP  + E NP +E   Y IF   +K ++ER E  GGN    + EEL+  YE  +LHP DLK ++SK + + L P R +   N
Sbjct:  173 GMEQRKIHMLAREILPRLGYR--PPVCIHIPLIHGTDGSDKMSSSK-GNFIAIDDTPKEIKNKINKSFCPIGVSEDNPVMEIAHYYIFDTHEKILIERPEKFGGNLEL-TEEELIQTYENEDLHPMDLKNTVSKYLIERLAPAREYMENN 318          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METS3 (Tyrosyl-tRNA synthetase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.420e-17
Identity = 52/149 (34.90%), Postives = 84/149 (56.38%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNK 447
            GM+QR + +LARE  + I  K  P+ +   +L GL  G  KMS S   + I ++D   E+  KIKK+YCP    EGNP +E  +  ++P  +  +++R E  GG+    ++E+L+ D+  G+LHP DLK  +   + +   PVR +  +
Sbjct:  175 GMEQRKIQMLARENLEKIDEK-VPVCIHTPLLHGLD-GDAKMSSSK-GNYIAVDDSVEEITKKIKKSYCPQGETEGNPMIEIAETFVYPNQETLLIKRPEKFGGDIEL-THEQLINDFSNGDLHPMDLKNGIKDFLIEHFAPVREYMEE 319          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METAC (Tyrosyl-tRNA synthetase OS=Methanosarcina acetivorans GN=tyrS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.100e-16
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            G+DQR +++LARE    +  +  PI +   +L GL  G +  S  D  + I ++D   ++  K KKA+C    VE NP L   +Y IFP  +  V+ER E  GG+ T+ SY E+ +++ E  +HP DLK + +K IN+IL PVR
Sbjct:  174 GIDQRKIHMLARENLKSLGFET-PICIHTPILLGLD-GTKMASSKD--NFISIDDTGEDIYRKFKKAFCKIGDVEENPILALFRYHIFPRYETVVIERPEKFGGDITYHSYAEMESNFIEEKVHPMDLKNAAAKYINEILDPVR 313          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METTH (Tyrosyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=tyrS PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.200e-16
Identity = 54/146 (36.99%), Postives = 81/146 (55.48%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNH 438
            GM+QR +++LARE    +   + P+ +   +L G   G EKMS S   + I ++D   E+  K+KK+YCP    EGNP +E +KY I P      + R E  GG+   E  +EL+  Y    LHP DLK ++S  +  +L+PVR +
Sbjct:  174 GMEQRKIHMLARENLPRLGF-DAPVCIHTPLLHGTD-GSEKMSSSK-GNFIAVDDSPDEIREKVKKSYCPMGETEGNPIIEIVKYFIMPEYGMMTIRRPEKFGGDLELE-LDELLEMYSSSELHPLDLKNAVSDYLVDMLEPVREY 315          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY_METVS (Tyrosyl-tRNA synthetase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tyrS PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.458e-16
Identity = 55/144 (38.19%), Postives = 84/144 (58.33%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GM+QR +++L+RE   ++  K  PI + + +L GL  G+ KMS S   + I ++D+E  +  K+K A+CP K V GNP LE  +Y +   D    + R E  GGN    +Y EL   Y EG LHP D+K  +++ + +IL P+R
Sbjct:  179 GMEQRKIHMLSREILPNMGYK-APICIHNPILTGLD-GEGKMSSSK-GNLIAVDDDEVTIKNKLKNAFCPMKEVFGNPVLEIARYYL---DYPVNINRPEKYGGNLVLNNYGELETAYIEG-LHPMDVKTLVAEQLIEILNPIR 315          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_ENCCU (Probable tyrosyl-tRNA synthetase, cytoplasmic OS=Encephalitozoon cuniculi GN=ECU05_1120i PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.258e-12
Identity = 51/155 (32.90%), Postives = 81/155 (52.26%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNP---CLEYIKYIIFP--WDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKN 450
            G+DQR +   AR+Y   +    K I L   MLPGL    +KMS SD  S I + D +  +  KI+K +C     EGN     +    +I+FP    K   V  ++ +G    FE Y+E   ++   ++HPGDLK + ++ I++I++P+R    K+
Sbjct:  181 GVDQRKIFTYARKYLP-LLNYEKRIHLMSPMLPGLNS--DKMSSSDDLSKIDLMDSKEAIWRKIRKCFCE----EGNKDNGLMMIFSHIVFPILQLKGECVRITDRDGREMAFEKYQEFEEEFVRKSIHPGDLKSNAARLIDEIIRPIREEMEKD 328          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYY2_PYRAE (Tyrosyl-tRNA synthetase 2 OS=Pyrobaculum aerophilum GN=tyrS2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.803e-12
Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQ---------------QGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGNPCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVR 432
            GMDQR  ++LAR+  + +  K KPI L   ++  L                    KMSKS P SAI + D E +V  KI  AYCPP+  + NP  E   Y++ P+     ++        + +E    L  DY EG + P +LK +++ A+  +L  ++
Sbjct:  165 GMDQRRAHMLARDVAEKLGLK-KPIALHTPIITSLSGTGRMEGTHREIDEVYAMYKMSKSKPQSAILITDSEEDVRKKIWAAYCPPRETKFNPVFEIAAYLLIPYHGPLEIK-------GRRYEEGNALERDYREGVVTPQELKEAVASALVGLLSKLK 315          
BLAST of DY258063 vs. ExPASy Swiss-Prot
Match: SYYC_ENTBH (Probable tyrosyl-tRNA synthetase, cytoplasmic OS=Enterocytozoon bieneusi (strain H348) GN=EBI_24879 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.244e-12
Identity = 53/162 (32.72%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    1 GMDQRILNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSAIYMEDEEAEVNVKIKKAYCPPKIVEGN---PCLEYIKYIIFPWDKKFVVERSEANGGNKTFESYEELVADYEEGNLHPGDLKPSLSKAINKILQPVRNHFNKNANAQDLLKR 477
            G DQR + + A+ +   +  K K I L + M+PGL    +KMS SD  S I + D E ++N KI K +C     EGN     L   +++IF +     + +       K++ S E++  D+E   +HP DLK + S  INK++ P+RN   K+    D++K+
Sbjct:  194 GEDQRKIFMHAKTFLPKLGYK-KRIHLMNPMMPGLNS--DKMSSSDELSKIDLLDTEQQINKKINKCFCE----EGNLQSGVLHVFEFVIFHYYTSISINK-------KSYTSIEDVKKDFEMKLIHPKDLKLACSNYINKMVTPIRNEMLKDI---DMIKK 338          
The following BLAST results are available for this feature:
BLAST of DY258063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
SYY_METLZ1.697e-1737.86Tyrosyl-tRNA synthetase OS=Methanocorpusculum labr... [more]
SYY_HALLT1.697e-1735.95Tyrosyl-tRNA synthetase OS=Halorubrum lacusprofund... [more]
SYY_METST8.420e-1736.67Tyrosyl-tRNA synthetase OS=Methanosphaera stadtman... [more]
SYY_METS38.420e-1734.90Tyrosyl-tRNA synthetase OS=Methanobrevibacter smit... [more]
SYY_METAC1.100e-1638.89Tyrosyl-tRNA synthetase OS=Methanosarcina acetivor... [more]
SYY_METTH3.200e-1636.99Tyrosyl-tRNA synthetase OS=Methanobacterium thermo... [more]
SYY_METVS5.458e-1638.19Tyrosyl-tRNA synthetase OS=Methanococcus vannielii... [more]
SYYC_ENCCU1.258e-1232.90Probable tyrosyl-tRNA synthetase, cytoplasmic OS=E... [more]
SYY2_PYRAE2.803e-1230.82Tyrosyl-tRNA synthetase 2 OS=Pyrobaculum aerophilu... [more]
SYYC_ENTBH6.244e-1232.72Probable tyrosyl-tRNA synthetase, cytoplasmic OS=E... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DD12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258063 ID=DY258063; Name=DY258063; organism=Citrus clementina; type=EST; length=1242bp
GGCATGGATCAGCGGATTTTAAATGTACTTGCAAGAGAGTACTGTGATGA
CATCAAGAGGAAAAACAAGCCCATCATTTTGTCGCATCATATGCTTCCTG
GACTTCAGCAAGGACAAGAAAAGATGTCAAAGAGTGATCCATCATCTGCC
ATCTACATGGAGGATGAGGAGGCTGAAGTCAATGTGAAAATAAAGAAAGC
ATACTGCCCTCCAAAGATTGTTGAAGGAAATCCATGTCTGGAGTACATAA
AATACATCATCTTTCCATGGGACAAAAAATTTGTGGTGGAGCGTAGCGAA
GCCAATGGTGGCAACAAGACCTTCGAAAGCTATGAAGAACTTGTTGCTGA
TTATGAAGAAGGAAATTTACATCCTGGGGATCTGAAACCTTCTCTGTCTA
AAGCAATAAATAAGATACTGCAGCCTGTGCGTAATCATTTCAACAAGAAT
GCTAATGCCCAGGATCTGCTGAAACGTGTTAAGGGTTACAGAGTTACCAG
GTGAGATGTGCAAGGGATGTCTGCTTGTTGCCTTTGGTGTCTTTGCTAAC
AGAGAAGAAACTTCCTTTTGATTAAAGTTAAATATGACGTTCGGTTACGA
TCATGAATACTAGTAGAAATTAACAAAAATTAGTTGTTGAAATTATAATT
TATACTATTCTCAGCTTGGGGATTGTTTAAAAAAAACAAATATTCATAAA
AAAAAAACCTTAACCAAATAAAAAAAAATAACAACAACAATAAACCAACA
TTTAAAACCAATAAAAAAAGAAAAAAAGTAAGAGAAAAAATATTACCCCC
CCACTAACAGTTTTTTTGGGGCCCCCCCCCCCCCCCAATTAAATCAAAAA
AAAAAAAAAAATTATAATGGGGCGCGCCCAATTTAAAACCTCATTGGGAA
AAATTCCCCCAAAAAGGAGAGGATTAAAAAAAAATTCCGGGGGGCCCTTT
TTTTACCACACGCGGGAAGGGGGAAAAAACACCGGGGTGTTCCCCACAAT
ATTAATACCCCTTGGAGCACCCCCCCCCCCTTTTTCCCCGGGGGGGGGAA
AAAGAAAAAAAAAAACCCCCCCCCCCCCCATCCCCCCCCTCTCCCCAAGA
GTTGTGCGCCGCGCCGGGAAGGAGGGAGAAGAAAGAGATAATTATAAACC
ACTAAAATTATTTTTTTTGAAAAAAATTCCCCCCCTATAAATTTTTTTTT
TTAATAAACACCCCCCTCCTATTTTTTTCACCAAAAAAAACC
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