DY258067

Overview
NameDY258067
Unique NameDY258067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:299..1614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.437e-40
Identity = 84/136 (61.76%), Postives = 106/136 (77.94%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 166.392 bits (420), Expect = 3.437e-40
Identity = 78/114 (68.42%), Postives = 98/114 (85.96%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 343
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK ++
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.489e-40
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADT 352
            +WDTAGQERFRTITTAYYRGAMGILLVYDVTDE SFNNI NW +N++ +A++ V  ILVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVEE F+S+A  I+  +A T
Sbjct:   64 VWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKT 179          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 80/134 (59.70%), Postives = 107/134 (79.85%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 391
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 80/134 (59.70%), Postives = 107/134 (79.85%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 391
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 80/134 (59.70%), Postives = 107/134 (79.85%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 391
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 80/134 (59.70%), Postives = 107/134 (79.85%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 391
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF ETSAK++ NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITE 193          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_BOVIN (Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 5.862e-40
Identity = 83/136 (61.03%), Postives = 106/136 (77.94%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NIRNWIRNIE+HAS +V K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  F+++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFYTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.999e-40
Identity = 79/134 (58.96%), Postives = 107/134 (79.85%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQ 391
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF+NI+NWIRNIE+HAS +V ++++GNK DM++ KR V   +G+ LA +YGIKF E SAK+++NVEE FF++ARDI     +++ D++S      +KI +
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMND-KRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITE 193          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.909e-39
Identity = 81/136 (59.56%), Postives = 103/136 (75.74%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIK----QRLADTDSRAEPQTIKINQPD 397
            IWDTAGQERFRTITTAYYRGAMGI+LVYD+T+E SF NIRNW+RNIE+HAS +V K+++GNK D ++ KR V   +G+ LA  +GIKF ETSAK N+N+E  FF++ARDIK    ++L     +   Q +KI  PD
Sbjct:   61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDAND-KRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PD 194          
The following BLAST results are available for this feature:
BLAST of DY258067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8A_PONAB3.437e-4061.76Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RAB8A_MOUSE3.437e-4068.42Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RYL1_YARLI4.489e-4067.52Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB8B_RAT5.862e-4059.70Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB5.862e-4059.70Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE5.862e-4059.70Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN5.862e-4059.70Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_BOVIN5.862e-4061.03Ras-related protein Rab-8A OS=Bos taurus GN=RAB8A ... [more]
RAB8B_BOVIN9.999e-4058.96Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
RAB8A_CHICK2.909e-3959.56Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258067 ID=DY258067; Name=DY258067; organism=Citrus clementina; type=EST; length=1316bp
AATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCAT
ACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAG
TCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGC
ATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGACG
AAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAA
TATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGA
GGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATA
CAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTGACCAG
GCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTA
AGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTT
TGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTATTGTT
CTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAGATCAT
CTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTTTTGTT
CCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCGATACT
GAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATCGCTTGTACGGCTTT
GCAATGGTGATATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATG
GCGTCTCAGCAAATTACAGAAGAAACTGTAAACTTGTGCACTGGAAACCC
CTTGCCCAAGGACATTGAGCAAATATTTTAATGGTTTCTGAAAGAATCAT
TTGCGGGCGCCCCCAGCCGAATACCTAAAAAGAAAATGAAAAAAATGATT
GGGGGGGGGCAAATATTGGGACGGAAAGGGACAACGGCTCGTAATTGAGA
ATAAAAAACCAATCGGGGGGGCCCCGTTCCAGCCACACGGAAGGGGGGGG
GAAAACCGCGGGTTACCCCCCTTAAATTTTTGGCTTGGCAACCACCCCCC
TTCCTCCTCGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCCCCCCCTC
CTCCCCCCTTCCTCTTATGGGTGCGCCCCCCAGGGGGGGGGGGGGGGAGA
AAGGAAATGTTGGGGGAAATAATTTTTATTTTTTTCTATAATTTTCTCCC
CTCCCTTTTTTTTTTTTTTTTTTTAATAACACCATCCCCCCCCTATTTTT
TTTTTTGGGGTAACCA
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