DY258067

Overview
NameDY258067
Unique NameDY258067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.957e-25
Identity = 55/114 (48.25%), Postives = 81/114 (71.05%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRL 343
            IWDTAGQE+FR+IT AYYRGA+  ++VYD+T   SF ++ +W+ +  + +S +V  +L+GNKAD+ E+ R V TS+ +  A++ G+ FFETSAKT LNV+E F      I ++L
Sbjct:   77 IWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADL-EANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILKKL 189          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 115.546 bits (288), Expect = 6.957e-25
Identity = 59/131 (45.04%), Postives = 85/131 (64.89%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDSRAEPQTI 379
            IWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N+  W+R +  HA  N+  ++ GNK+D++   R+V    GQ+LA++ G+ F ETSA    NVE+ F +I  +I     K+ LA  ++ A    I
Sbjct:   65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNH-LRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAI 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 9.086e-25
Identity = 56/131 (42.75%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQP 394
            IWDTAGQER+R IT+AYYRGA+G LLVYD+T   +F+N++ W+R +  HA  N+  ++ GNK+D++   RAV    G AL+++ G+ F ETSA    N+E+ F +I  +I   ++     A+  T   + P
Sbjct:   65 IWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH-LRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVP 194          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 114.775 bits (286), Expect = 1.187e-24
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            IWDTAGQER+R IT+AYYRGA+G LLVYD+    ++ N+  W++ +  HA  N+  +LVGNK+D+    RAVPT + +A A++ G+ F ETSA    NVE  F +I  +I
Sbjct:   64 IWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDL-RHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEI 172          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.187e-24
Identity = 58/135 (42.96%), Postives = 84/135 (62.22%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTIKINQP 394
            IWDTAGQER+ ++   YYRGA   ++VYD+T+  +F   +NW++ +++ AS N+   L GNKAD+  SKRAV   + QA AD+  + F ETSAKT +NV E+F +IA+ +     Q  A   SR     ++ N P
Sbjct:   74 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL-ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNAAGAPSRNRGVDLQENSP 207          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.550e-24
Identity = 55/126 (43.65%), Postives = 83/126 (65.87%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI-----KQRLADTDSRA 364
            IWDTAGQER+R +T+AYYRGA+G +LVYD+T   +F++I  W+  +  HA  N+  +L+GNK D+ E +RAVPT   +  A + G+ F ETSA    N+E+ F ++  +I     K+ LA  D+++
Sbjct:   68 IWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDL-EDQRAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAFLTVLTEIFNIVNKKNLAADDNQS 192          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.550e-24
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ +
Sbjct:   73 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.550e-24
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ +
Sbjct:   73 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 1.550e-24
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ +
Sbjct:   73 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.550e-24
Identity = 52/110 (47.27%), Postives = 78/110 (70.91%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            IWDTAGQER+ ++   YYRGA   ++VYD+T+E SF   +NW++ +++ AS N+   L GNKAD+  +KRAV   + Q+ AD+  + F ETSAKT++NV E+F +IA+ +
Sbjct:   73 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL-ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 181          
The following BLAST results are available for this feature:
BLAST of DY258067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2B_DICDI6.957e-2548.25Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RAA2C_ARATH6.957e-2545.04Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA9.086e-2542.75Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_BOVIN1.187e-2449.09Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RAB5C_CANFA1.187e-2442.96Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]
RB11D_TOBAC1.550e-2443.65Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RAB5A_MOUSE1.550e-2447.27Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA1.550e-2447.27Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN1.550e-2447.27Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA1.550e-2447.27Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258067 ID=DY258067; Name=DY258067; organism=Citrus clementina; type=EST; length=1316bp
AATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCAT
ACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAG
TCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGC
ATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGACG
AAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAA
TATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGA
GGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATA
CAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTGACCAG
GCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTA
AGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTT
TGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTATTGTT
CTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAGATCAT
CTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTTTTGTT
CCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCGATACT
GAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATCGCTTGTACGGCTTT
GCAATGGTGATATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATG
GCGTCTCAGCAAATTACAGAAGAAACTGTAAACTTGTGCACTGGAAACCC
CTTGCCCAAGGACATTGAGCAAATATTTTAATGGTTTCTGAAAGAATCAT
TTGCGGGCGCCCCCAGCCGAATACCTAAAAAGAAAATGAAAAAAATGATT
GGGGGGGGGCAAATATTGGGACGGAAAGGGACAACGGCTCGTAATTGAGA
ATAAAAAACCAATCGGGGGGGCCCCGTTCCAGCCACACGGAAGGGGGGGG
GAAAACCGCGGGTTACCCCCCTTAAATTTTTGGCTTGGCAACCACCCCCC
TTCCTCCTCGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCCCCCCCTC
CTCCCCCCTTCCTCTTATGGGTGCGCCCCCCAGGGGGGGGGGGGGGGAGA
AAGGAAATGTTGGGGGAAATAATTTTTATTTTTTTCTATAATTTTCTCCC
CTCCCTTTTTTTTTTTTTTTTTTTAATAACACCATCCCCCCCCTATTTTT
TTTTTTGGGGTAACCA
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