DY258067

Overview
NameDY258067
Unique NameDY258067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:299..1614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 1.952e-35
Identity = 73/130 (56.15%), Postives = 100/130 (76.92%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLAD--TDSRAEPQTIKI 385
            IWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK D+ E+ R V    G+ALADE GI F ETSAK   NVE+ F ++A +IK R+A     + ++P T+++
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQM 189          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.952e-35
Identity = 70/110 (63.64%), Postives = 93/110 (84.55%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.952e-35
Identity = 70/110 (63.64%), Postives = 93/110 (84.55%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 4.348e-35
Identity = 70/110 (63.64%), Postives = 93/110 (84.55%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   +   LA E+GI+FFETSAK+++NV+E F S+ARDI
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDI 169          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 9.685e-35
Identity = 70/115 (60.87%), Postives = 92/115 (80.00%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLA 346
            IWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+  SK+ V  S  +A ADE GI F ETSAK   NVE+ F ++A +IK R+A
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDL-TSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMA 174          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 9.685e-35
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQTIKINQPD 397
            +WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI   L  T  R    + K +  D
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDI---LLKTGGRRSGNSSKPSSTD 188          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.265e-34
Identity = 69/110 (62.73%), Postives = 93/110 (84.55%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQERF+TITTAYYRGAMGI+LVYD+TDE SF NI+NW+++I+++AS  V ++L+GNK DM E+KR V   + + LA E+ I+FFETSAK+++NV+E F S+ARDI
Sbjct:   61 VWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDM-EAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDI 169          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB10_RAT (Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.265e-34
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAE 367
            IWDTAGQERF TITT+YYRGAMGI+LVYD+T+  SF NI  W+RNI+QHA+++V ++L+ NK DMD  KR VP  KG+ +A E+ I+FFETSAK N+N+E+ F ++  DI ++    +  +E
Sbjct:   62 IWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDQHANEDVERMLLRNKCDMDH-KRVVPKGKGEQIAREHRIRFFETSAKANINIEKAFLTLPEDILRKTPVKEPNSE 182          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: YPTV1_VOLCA (GTP-binding protein yptV1 OS=Volvox carteri GN=YPTV1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 6.278e-34
Identity = 69/123 (56.10%), Postives = 92/123 (74.80%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEP 370
            IWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W+  I+++AS+NVNK+LVGNK+D+   K+ V     +A ADE GI F ETSAK   NVE+ F ++A +IK R+A      +P
Sbjct:   61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLAEIDRYASENVNKLLVGNKSDL-TGKKVVDYQAAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPVPPKP 182          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.399e-33
Identity = 68/130 (52.31%), Postives = 100/130 (76.92%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQ-TIKIN 388
            IWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD+ GI F ETSAK   NVE+ F ++A +IK R+    + ++ + ++KIN
Sbjct:   64 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKNRMGPITAASDSKPSVKIN 192          
The following BLAST results are available for this feature:
BLAST of DY258067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RIC1_ORYSJ1.952e-3556.15Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
RAB13_HUMAN1.952e-3563.64Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN1.952e-3563.64Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
RAB13_MESAU4.348e-3563.64Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
YPTC1_CHLRE9.685e-3560.87GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RAB13_RAT9.685e-3556.06Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB13_MOUSE1.265e-3462.73Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB10_RAT1.265e-3455.74Ras-related protein Rab-10 OS=Rattus norvegicus GN... [more]
YPTV1_VOLCA6.278e-3456.10GTP-binding protein yptV1 OS=Volvox carteri GN=YPT... [more]
RAB1A_LYMST1.399e-3352.31Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258067 ID=DY258067; Name=DY258067; organism=Citrus clementina; type=EST; length=1316bp
AATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCAT
ACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAG
TCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGC
ATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGACG
AAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAA
TATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGA
GGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATA
CAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTGACCAG
GCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTA
AGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTT
TGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTATTGTT
CTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAGATCAT
CTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTTTTGTT
CCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCGATACT
GAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATCGCTTGTACGGCTTT
GCAATGGTGATATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATG
GCGTCTCAGCAAATTACAGAAGAAACTGTAAACTTGTGCACTGGAAACCC
CTTGCCCAAGGACATTGAGCAAATATTTTAATGGTTTCTGAAAGAATCAT
TTGCGGGCGCCCCCAGCCGAATACCTAAAAAGAAAATGAAAAAAATGATT
GGGGGGGGGCAAATATTGGGACGGAAAGGGACAACGGCTCGTAATTGAGA
ATAAAAAACCAATCGGGGGGGCCCCGTTCCAGCCACACGGAAGGGGGGGG
GAAAACCGCGGGTTACCCCCCTTAAATTTTTGGCTTGGCAACCACCCCCC
TTCCTCCTCGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCCCCCCCTC
CTCCCCCCTTCCTCTTATGGGTGCGCCCCCCAGGGGGGGGGGGGGGGAGA
AAGGAAATGTTGGGGGAAATAATTTTTATTTTTTTCTATAATTTTCTCCC
CTCCCTTTTTTTTTTTTTTTTTTTAATAACACCATCCCCCCCCTATTTTT
TTTTTTGGGGTAACCA
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