DY258067

Overview
NameDY258067
Unique NameDY258067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1316
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10149 contig Ccv1_Contig10149:299..1614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB36_MOUSE (Ras-related protein Rab-36 OS=Mus musculus GN=Rab36 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.321e-12
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQA--LADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADTDSRAEPQT 376
            IWDTAGQE+F+ I +AYYRGA  I+  +D+TD  +  + R W+ ++  ++ + +    LVG K D+  S  A   ++ +A  LA+E   +++  SAKT  NV+  F  +A    ++    D    P T
Sbjct:  110 IWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDVLRENEAGSCFIFLVGTKKDL-LSGAACEQAEAEAVHLANEMQAEYWSVSAKTGENVKAFFSRVAALAFEQSVLQDLEKRPST 236          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.032e-12
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQR 340
            I DTAGQ  F  +   Y RG  G ++ Y VTD  SF     +   I Q   +  +  +LVGNK D+++  R V T +G  LA +Y   FFETSA     +++ F  + R+I+++
Sbjct:   72 ILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKFKELIFQVRHTYEIPLVLVGNKIDLEQF-RQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLVREIRRK 184          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RRAS_MOUSE (Ras-related protein R-Ras OS=Mus musculus GN=Rras PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.960e-12
Identity = 41/113 (36.28%), Postives = 65/113 (57.52%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNI-RNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQ 337
            I DTAGQE F  +   Y R   G LLV+ + D  SFN + + + + +     D+   +LVGNKAD+ E++R V  S+  + +  + + +FE SAK  LNV+E F  + R +++
Sbjct:   81 ILDTAGQEEFGAMREQYMRAGNGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPIVLVGNKADL-ENQRQVLRSEASSFSASHHMTYFEASAKLRLNVDEAFEQLVRAVRK 192          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAPB_DICDI (Ras-related protein rapB OS=Dictyostelium discoideum GN=rapB PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.171e-12
Identity = 42/115 (36.52%), Postives = 69/115 (60.00%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEY-GIKFFETSAKTNLNVEEVFFSIARDIKQR 340
            + DTAG E    +   Y + A G +LVY +  +S+F  I++ +  + +    + V  +LVGNK D+D + R V T++G+ LA+ Y    F+E S+K  +NV+ VFFSI + IK++
Sbjct:   74 VLDTAGSEVLVAMRELYMKNAEGFILVYSILVKSTFLEIKDIVEQLFRVKEEEEVPIVLVGNKIDLD-AHREVSTNEGKQLANSYPNCDFWEASSKDRINVDNVFFSIVKRIKEK 187          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RAB32_MOUSE (Ras-related protein Rab-32 OS=Mus musculus GN=Rab32 PE=2 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 5.171e-12
Identity = 34/105 (32.38%), Postives = 57/105 (54.29%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHA----SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEE 304
            +WD AGQERF  +T  YY+ A+G  +V+D++  S+F+ +  W  +++          +  +L+ NK D  +     P+   Q   D     +FETSAK N+N++E
Sbjct:   77 LWDIAGQERFGNMTRVYYKEALGAFVVFDISRSSTFDAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDNSQSPSQMDQFCKDHGFTGWFETSAKDNINIDE 181          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RSR1_YEAST (Ras-related protein RSR1 OS=Saccharomyces cerevisiae GN=RSR1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFN---NIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYG-IKFFETSAKTNLNVEEVFFSIARDI----KQRLADTDSRAEPQTI-KINQP 394
            I DTAG  +F  +   Y +  MG LLVY VTD  S      +R  +  I+   SD V  +L+GNKAD+  ++R +   +G  ++ ++G + F+ETSA    NV+EVF  + R I     + +A  D+R + Q   KI  P
Sbjct:   55 ILDTAGIAQFTAMRELYIKSGMGFLLVYSVTDRQSLEELMELREQVLRIKD--SDRVPMVLIGNKADL-INERVISVEEGIEVSSKWGRVPFYETSALLRSNVDEVFVDLVRQIIRNEMESVAVKDARNQSQQFSKIESP 191          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: REBL1_RAT (GTPase RhebL1 OS=Rattus norvegicus GN=Rhebl1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 36/109 (33.03%), Postives = 67/109 (61.47%), Query Frame = 2
Query:    8 DTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQ-HASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            DTAGQ+++  +  ++  G  G +LVY+VT   SF  ++N  + +++ H    +  +LVGNKAD+  + R V   +G+ LA+ +G  F E+SA+ N  ++++F  + ++I
Sbjct:   60 DTAGQDKYSILPYSFIIGVHGYVLVYNVTSLRSFQIVKNLYQKLQEGHGKTRLPVLLVGNKADL-SADREVQAVEGKKLAESWGATFMESSARDNQLIQDIFIRVIQEI 167          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct:   66 VWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERK---VKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 171          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.754e-12
Identity = 36/110 (32.73%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 331
            +WDTAGQE+F  +   YY  A   ++++DVT   ++ N+ NW R++ +   +N+  +L GNK D+ E K     +K      +  +++++ SAK+N N E+ F  +AR +
Sbjct:   65 VWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKERK---VKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170          
BLAST of DY258067 vs. ExPASy Swiss-Prot
Match: RASM_RAT (Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 8.821e-12
Identity = 44/127 (34.65%), Postives = 72/127 (56.69%), Query Frame = 2
Query:    2 IWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNI-EQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAK-TNLNVEEVFFSIARDIKQRLADTDSRAEPQT 376
            + DTAGQE F  +   Y R   G L+VY VTD++SF ++  + + I      ++   ILV NK D+    R V   +G+ +A +Y I + ETSAK   LNV++ F  + R I+Q++ + + + + +T
Sbjct:   65 VLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL-MHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPEKNQKKKKKT 190          
The following BLAST results are available for this feature:
BLAST of DY258067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB36_MOUSE2.321e-1234.38Ras-related protein Rab-36 OS=Mus musculus GN=Rab3... [more]
RIT2_MOUSE3.032e-1235.96GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RRAS_MOUSE3.960e-1236.28Ras-related protein R-Ras OS=Mus musculus GN=Rras ... [more]
RAPB_DICDI5.171e-1236.52Ras-related protein rapB OS=Dictyostelium discoide... [more]
RAB32_MOUSE5.171e-1232.38Ras-related protein Rab-32 OS=Mus musculus GN=Rab3... [more]
RSR1_YEAST6.754e-1235.71Ras-related protein RSR1 OS=Saccharomyces cerevisi... [more]
REBL1_RAT6.754e-1233.03GTPase RhebL1 OS=Rattus norvegicus GN=Rhebl1 PE=2 ... [more]
GSP2_YEAST6.754e-1232.73GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]
GSP1_YEAST6.754e-1232.73GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RASM_RAT8.821e-1234.65Ras-related protein M-Ras OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DE05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258067 ID=DY258067; Name=DY258067; organism=Citrus clementina; type=EST; length=1316bp
AATATGGGATACTGCAGGTCAAGAGAGGTTTCGAACAATTACAACCGCAT
ACTACCGAGGAGCCATGGGAATATTGCTCGTATATGATGTCACCGACGAG
TCATCTTTCAACAACATTAGGAATTGGATCCGTAATATCGAACAGCATGC
ATCTGACAATGTAAACAAGATTCTGGTGGGTAACAAGGCCGACATGGACG
AAAGCAAAAGGGCTGTCCCCACTTCAAAGGGCCAAGCTCTTGCTGATGAA
TATGGCATCAAGTTCTTTGAGACTAGTGCAAAGACAAACCTAAATGTGGA
GGAGGTTTTCTTTTCAATTGCAAGGGACATCAAGCAAAGGCTTGCAGATA
CAGACTCTAGGGCTGAGCCTCAGACTATCAAAATTAACCAACCTGACCAG
GCAGGTGGGGCTGCTCAAGCTGCCCAAAGATCAGCTTGCTGCGGTTCTTA
AGCAATCTATGCGGGTGAGATCACATGGGTATATGTCAAGGCAATCATTT
TGGTTGGGACAACTAATTTTGTCAACTATATCATTGGTGCTTGTATTGTT
CTATCATTATTTTACAACTACCACACGCTTGCTTGTGAATGATAGATCAT
CTGTGTTTGGCATTAATTATATTATATTAGTTTCTTTCATTTCTTTTGTT
CCTTGTGCTGAAAAACCATGTAATGCCTGTTATTTTGCTTTTTCGATACT
GAGAATTAAATAGAAGCAGCCTTCTTTTCTCTGATCGCTTGTACGGCTTT
GCAATGGTGATATGAGAAAGGCCTTGAACATTTTGCAGTCAACACATATG
GCGTCTCAGCAAATTACAGAAGAAACTGTAAACTTGTGCACTGGAAACCC
CTTGCCCAAGGACATTGAGCAAATATTTTAATGGTTTCTGAAAGAATCAT
TTGCGGGCGCCCCCAGCCGAATACCTAAAAAGAAAATGAAAAAAATGATT
GGGGGGGGGCAAATATTGGGACGGAAAGGGACAACGGCTCGTAATTGAGA
ATAAAAAACCAATCGGGGGGGCCCCGTTCCAGCCACACGGAAGGGGGGGG
GAAAACCGCGGGTTACCCCCCTTAAATTTTTGGCTTGGCAACCACCCCCC
TTCCTCCTCGGGGGGGGGGGAAAAAAAAAAAAAAACCCCCCCCCCCCCTC
CTCCCCCCTTCCTCTTATGGGTGCGCCCCCCAGGGGGGGGGGGGGGGAGA
AAGGAAATGTTGGGGGAAATAATTTTTATTTTTTTCTATAATTTTCTCCC
CTCCCTTTTTTTTTTTTTTTTTTTAATAACACCATCCCCCCCCTATTTTT
TTTTTTGGGGTAACCA
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