DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_HAEIN (D-3-phosphoglycerate dehydrogenase OS=Haemophilus influenzae GN=serA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.591e-16
Identity = 59/175 (33.71%), Postives = 86/175 (49.14%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*K-PSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELF-----GL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 543
            GK +GIIG G IG  ++  AE+    + +Y I  K P    K   S+ EL S+C ++ +  P+   T+ ++N   I  L    +LIN  RG  V+   L  AL +G+L GA +DVF  EP    E F        NV+L PH+G  T E ++ +   V G    +  N   L+ V
Sbjct:  152 GKKLGIIGYGHIGSQLSIIAESLGMDVYFYDIENKLPLGNAKQVRSLEELLSSCDVVSLHVPELPSTKNLMNVARIAQLKQGAILINAARGTVVDIDALAQALKDGKLQGAAIDVFPVEPASINEEFISPLREFDNVILTPHIGGSTAEAQENIGFEVAGKFVKYSDNGSTLSSV 326          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_DICDI (D-3-phosphoglycerate dehydrogenase OS=Dictyostelium discoideum GN=serA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.914e-16
Identity = 57/168 (33.93%), Postives = 84/168 (50.00%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*K-PSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHV-----PEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLN 522
            GKT+GIIG G IG  ++  AEA    + YY I  + P    K  P +  L  N + + +  P T+ET  +I  E I+ +     L+N  RG  V+   L +AL  G L+GA +DV+  EP         EL    N +L PH+G  T E ++ +  L + +L   F+N
Sbjct:  151 GKTLGIIGYGHIGSQLSVLAEAMGMSVLYYDIARRLPLGNSKMCPDMKTLLENSNFVTLHVPDTKETVGLIGEEEINTMKKGSYLLNASRGKVVQIPHLANALRSGHLAGAAVDVYPEEPSANCKDWECELQKCPNTILTPHIGGSTEEAQEAIG-LEVSDLIVQFIN 317          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_SYNY3 (D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=serA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 57/180 (31.67%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMA--------DLVLGNLEAHFLNKPLLTPVV 546
            KT+G++GLG+IG  VA  A+A    +  Y          +   ++ +L    S    + +  P+T ET  +IN E +  + P   +IN  RG  ++E  L++A+   ++ GA LDVF  EP     L    NV+L PH+G+ T E +  +A        D++LG      +N P LTP V
Sbjct:  168 KTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGCTLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTAIETAQIGGAALDVFAQEPLGESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVLLGLPARSAVNIPGLTPDV 347          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOLU (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ghrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 53/143 (37.06%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL-*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++I+ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE    L   V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWSGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLIEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWLHPRVAITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOL6 (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O6 GN=ghrA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 53/143 (37.06%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++I+ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLIEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESLLWQHPRVTITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SHISS (Glyoxylate/hydroxypyruvate reductase A OS=Shigella sonnei (strain Ss046) GN=ghrA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SHIDS (Glyoxylate/hydroxypyruvate reductase A OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SHIBS (Glyoxylate/hydroxypyruvate reductase A OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SHIB3 (Glyoxylate/hydroxypyruvate reductase A OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOUT (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain UTI89 / UPEC) GN=ghrA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
SERA_HAEIN7.591e-1633.71D-3-phosphoglycerate dehydrogenase OS=Haemophilus ... [more]
SERA_DICDI9.914e-1633.93D-3-phosphoglycerate dehydrogenase OS=Dictyosteliu... [more]
SERA_SYNY36.426e-1531.67D-3-phosphoglycerate dehydrogenase OS=Synechocysti... [more]
GHRA_ECOLU6.426e-1537.06Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOL66.426e-1537.06Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_SHISS1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Shigella... [more]
GHRA_SHIDS1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Shigella... [more]
GHRA_SHIBS1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Shigella... [more]
GHRA_SHIB31.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Shigella... [more]
GHRA_ECOUT1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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