DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOSM (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOSE (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain SE11) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOLI (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain K12) GN=ghrA PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOLC (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOL5 (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOK1 (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O1:K1 / APEC GN=ghrA PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOHS (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O9:H4 (strain HS) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECODH (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain K12 / DH10B) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECOBW (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli (strain K12 / BW2952) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ECO8A (Glyoxylate/hydroxypyruvate reductase A OS=Escherichia coli O8 (strain IAI1) GN=ghrA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.096e-14
Identity = 52/143 (36.36%), Postives = 79/143 (55.24%), Query Frame = 1 
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELA---SNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+  + +  P+  +S T K     + +    EL+   S C +L+   P T ET  IIN+++++ L     L+N+ RG  V E +LL+AL  G++ GA LDVF  EP  PE  L+    V + PHV + T
Sbjct:  138 TIGILGAGVLGSKVAQSLQTWRFPLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHVAAIT 280
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GHRA_ECOSM1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOSE1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOLI1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOLC1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOL51.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOK11.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOHS1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECODH1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECOBW1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]
GHRA_ECO8A1.096e-1436.36Glyoxylate/hydroxypyruvate reductase A OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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