DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: LDHD_STRA3 (D-lactate dehydrogenase OS=Streptococcus agalactiae serotype III GN=ldhD PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLK--YKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENE-PHVPEELFG 417
            TV IIG GRIG+A AK  + F C +  Y I   P      +Y  SV E      ++ +  P T E   + N ++        +L+N+ RG  VE ++LL AL +G L GAG+D +E E P++P+   G
Sbjct:  147 TVAIIGTGRIGLATAKIFKGFGCRVIGYDIYHNPMADGILEYVNSVEEAVEKADLVSLHMPPTAENTHLFNLDMFKQFKKGAILMNMARGALVETKDLLEALDQGLLEGAGIDTYEFEGPYIPKNCQG 274          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SALTI (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella typhi GN=ghrA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 52/144 (36.11%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            +VGIIG G +G  VA+  +A+  P+  +S + K     + Y    EL +      +L+   P T +T  IIN E++D L     ++N+ RG  V+E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 SVGIIGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SALAR (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=ghrA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.700e-13
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFEL---ASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            +VGI+G G +G  VA+  +A+  P+  +S + K     + Y    EL    +   +L+   P T +T  IINRE+++ L     ++N+ RG  V E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 SVGIMGAGILGSKVAESLQAWGFPLRCWSRSRKSWPGVESYAGREELDAFLNQTRVLINLLPNTAQTVGIINRELLNKLPDSAYVLNLARGVHVNEADLLAALESGKLKGAMLDVFSQEP-LPQESPLWRHSRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2355_CORGL (Uncharacterized protein Cgl2355/cg2587 OS=Corynebacterium glutamicum GN=Cgl2355 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 50/173 (28.90%), Postives = 86/173 (49.71%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAEAF---ICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 543
            KTV I+G G IG+ + +  + F      +N      + + +         + +   + V+  P T+ T +I+N E +  + P  V++NVGRGP +   +L+ AL  G ++GA LDV + EP +P+   L+ + NVV+ PH  +     R    +L L N+E     + + T V
Sbjct:  127 KTVAILGAGGIGVRLLEMLKPFNVKTIAVNNSGRPVEGADETFAMDKAEHVWAEADVFVLILPLTDATYQIVNAETLGKMKPSAVVVNVGRGPLINTDDLVDALNNGTIAGAALDVTDPEP-LPDSHPLWEMDNVVITPHTANTNERIRALTGELTLRNIELFEAGEQMATEV 298          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_MACFA (D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 60/179 (33.52%), Postives = 81/179 (45.25%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R ++F      Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G   A  +N   LT
Sbjct:  145 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLAGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.605e-13
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYS-IT*KPSLK----YKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFG-L*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            GKT+G +G GRIG  + +R + F C + Y+  +   P L+     K+   + E+   C ++V+  P TE+TR + N+E+I  L    +++N  RG  +E + ++ A+  G + G   DV++ +P   +  +  + N  + PH    T++ +   A      LE +F
Sbjct:  197 GKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYF 362          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: YP113_YEAST (Putative 2-hydroxyacid dehydrogenase YPL113C OS=Saccharomyces cerevisiae GN=YPL113C PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRA-EAFICPINYYSIT*---KPSLKY--KYYPSVFELAS--NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFEN-EPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVL 495
            K V I+G G IG  +     + F   I YY  T    K  L Y  KY+  + +  +  N  ++++A P T  T  IINR+ +        ++NVGRG  ++E  LL AL  G+++  GLDVF+N E  V +EL    +V  +PH+GS       T+AD+V+
Sbjct:  218 KKVLILGFGSIGQNIGSNLHKVFNMSIEYYKRTGPVQKSLLDYNAKYHSDLDDPNTWKNADLIILALPSTASTNNIINRKSLAWCKDGVRIVNVGRGTCIDEDVLLDALESGKVASCGLDVFKNEETRVKQELLRRWDVTALPHIGS-------TVADMVI 371          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 60/179 (33.52%), Postives = 80/179 (44.69%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R +AF      Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G      +N   LT
Sbjct:  145 GKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SALTY (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella typhimurium GN=ghrA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            +VGI+G G +G  VA+  +A+  P+  +S + K     + Y    EL +      +L+   P T +T  IIN E++D L     ++N+ RG  V+E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 SVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SALSV (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            +VGI+G G +G  VA+  +A+  P+  +S + K     + Y    EL +      +L+   P T +T  IIN E++D L     ++N+ RG  V+E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 SVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT 280          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
LDHD_STRA32.700e-1335.94D-lactate dehydrogenase OS=Streptococcus agalactia... [more]
GHRA_SALTI2.700e-1336.11Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]
GHRA_SALAR2.700e-1335.42Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]
Y2355_CORGL3.526e-1328.90Uncharacterized protein Cgl2355/cg2587 OS=Coryneba... [more]
SERA_MACFA3.526e-1333.52D-3-phosphoglycerate dehydrogenase OS=Macaca fasci... [more]
FDH_ARATH4.605e-1327.71Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
YP113_YEAST6.015e-1334.78Putative 2-hydroxyacid dehydrogenase YPL113C OS=Sa... [more]
SERA_RAT6.015e-1333.52D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
GHRA_SALTY6.015e-1335.42Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]
GHRA_SALSV6.015e-1335.42Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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