DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SALA4 (Glyoxylate/hydroxypyruvate reductase A OS=Salmonella agona (strain SL483) GN=ghrA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 51/144 (35.42%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFEL---ASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            +VGI+G G +G  VA+  +A+  P+  +S + K     + Y    EL    +   +L+   P T +T  IIN E++D L     ++N+ RG  V+E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 SVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESYVGREELHAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-LPQESPLWRHPRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: VANH_ENTFA (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecalis GN=vanHB PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.855e-13
Identity = 52/167 (31.14%), Postives = 72/167 (43.11%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVP--------------EELFGL*NVVLMPHVGSGTVETRKTMADLVLGN 501
            TVG+IG G IG AV KR   F C +  Y  + K    Y     + EL  N  I+ +  P   +TR +I +  I  +     LIN GRG  V+   L+ AL  G+L GA LDV E E                   +L  + NV++ PH    T    +   +  + N
Sbjct:  149 TVGVIGTGHIGQAVVKRLRGFGCRVLAYDNSRKIEADYV---QLDELLKNSDIVTLHVPLCADTRHLIGQRQIGEMKQGAFLINTGRGALVDTGSLVEALGSGKLGGAALDVLEGEDQFVYTDCSQKVLDHPFLSQLLRMPNVIITPHTAYYTERVLRDTTEKTIRN 312          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 59/179 (32.96%), Postives = 80/179 (44.69%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R ++F      Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G      +N   LT
Sbjct:  145 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 59/179 (32.96%), Postives = 80/179 (44.69%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R ++F      Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G      +N   LT
Sbjct:  145 GKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_KLEP7 (Glyoxylate/hydroxypyruvate reductase A OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=ghrA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            TVGI+G G +G  VA+  + +  P+  +S + K   + + +    EL        +L+   P T ET  IIN+ ++  L  +  ++N+ RG  V E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PHV + T
Sbjct:  138 TVGIMGAGVLGAKVAESLQPWGFPLRVWSRSRKSWPQVQSFAGQAELGEFMQGTRVLINLLPNTAETAGIINQTLLAQLPDESYVLNLARGVHVVEEDLLAALNSGKLKGAMLDVFSREP-LPQESPLWAHPRVAMTPHVAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_KLEP3 (Glyoxylate/hydroxypyruvate reductase A OS=Klebsiella pneumoniae (strain 342) GN=ghrA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 50/144 (34.72%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            TVGI+G G +G  VA+  + +  P+  +S + K   + + +    EL        +L+   P T ET  IIN+ ++  L  +  ++N+ RG  V E +LL+AL  G+L GA LDVF  EP +P+E  L+    V + PHV + T
Sbjct:  138 TVGIMGAGVLGAKVAESLQPWGFPLRVWSRSRKSWPQVQSFAGQAELGEFLQGTRVLINLLPNTAETAGIINQTLLAQLPDESYVLNLARGVHVVEEDLLAALNSGKLKGAMLDVFSREP-LPQESPLWAHPRVAMTPHVAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: CTBP_DROME (C-terminal-binding protein OS=Drosophila melanogaster GN=CtBP PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 1.026e-12
Identity = 48/130 (36.92%), Postives = 65/130 (50.00%), Query Frame = 1
Query:   25 ARFTGKTVGIIGLGRIGMAVAKRAEAFICPINYYS------IT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPH 396
            AR  G T+G++GLGRIG AVA RA+AF   + +Y       I     L   Y        S+C  + + C   E    +IN   I  + P   L+N  RG  V++  L  AL +GR+  A LDV ENEP+
Sbjct:  170 ARIRGDTLGLVGLGRIGSAVALRAKAFGFNVIFYDPYLPDGIDKSLGLTRVYTLQDLLFQSDC--VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDETLALALKQGRIRAAALDVHENEPY 297          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF----ELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLE 507
            GK VGIIG+G IG + A++     C I Y++     + + K   + F    EL S+  ++ + CP T  T  +I+ +  + +     +IN  RG  + E   + A+  G+++ AGLDVF NEP   +       V + PH G  T  T     + VL ++E
Sbjct:  159 GKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVSFDELLSSSDVISINCPLTPATHDLISTKEFEKMKDGVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLNEPTPNKFWLECDKVTIQPHCGVYTNFTVAKTEECVLASIE 319          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.340e-12
Identity = 59/179 (32.96%), Postives = 80/179 (44.69%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R ++F      Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G      +N   LT
Sbjct:  145 GKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_YEAST (D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=SER3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 48/162 (29.63%), Postives = 79/162 (48.77%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSL-KYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-------------HVPEELFGL*NVVLMPHVGSGTVETRKTM 480
            GKT+GIIG G IG  ++  AEA    + YY I    +L   +   ++ EL +    + +  P T ET ++++     A+     +IN  RG  V+   L+ A+   +++GA LDV+ +EP                 EL  L N++L PH+G  T E + ++
Sbjct:  198 GKTLGIIGYGHIGSQLSVLAEAMGLHVLYYDIVTIMALGTARQVSTLDELLNKSDFVTLHVPATPETEKMLSAPQFAAMKDGAYVINASRGTVVDIPSLIQAVKANKIAGAALDVYPHEPAKNGEGSFNDELNSWTSELVSLPNIILTPHIGGSTEEAQSSI 359          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GHRA_SALA46.015e-1335.42Glyoxylate/hydroxypyruvate reductase A OS=Salmonel... [more]
VANH_ENTFA7.855e-1331.14D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
SERA_PANTR1.026e-1232.96D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN1.026e-1232.96D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
GHRA_KLEP71.026e-1234.72Glyoxylate/hydroxypyruvate reductase A OS=Klebsiel... [more]
GHRA_KLEP31.026e-1234.72Glyoxylate/hydroxypyruvate reductase A OS=Klebsiel... [more]
CTBP_DROME1.026e-1236.92C-terminal-binding protein OS=Drosophila melanogas... [more]
YGDH_SCHPO1.340e-1230.43Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
SERA_MOUSE1.340e-1232.96D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]
SERA_YEAST2.286e-1229.63D-3-phosphoglycerate dehydrogenase 1 OS=Saccharomy... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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