DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_ECO57 (D-3-phosphoglycerate dehydrogenase OS=Escherichia coli O157:H7 GN=serA PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 52/175 (29.71%), Postives = 81/175 (46.29%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*K-PSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELF-----GL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPV 543
            GK +GIIG G IG  +   AE+    + +Y I  K P         + +L +   ++ +  P+   T+ ++  + I  + P  +LIN  RG  V+   L  AL    L+GA +DVF  EP    + F        NV+L PH+G  T E ++ +   V G L  +  N   L+ V
Sbjct:  151 GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 46/166 (27.71%), Postives = 85/166 (51.20%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYS-IT*KPSLK----YKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFG-L*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            GKTVG +G GRIG  + +R + F C + Y+  +   P L+     KY   +  +   C ++V+  P TE+TR + N+E I  +    +++N  RG  ++ + +  A   G+++G G DV+  +P   +  +  + N  + PH+   T++ +   A  V   L+ +F
Sbjct:  189 GKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF 354          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: DDH_HAEIN (2-hydroxyacid dehydrogenase homolog OS=Haemophilus influenzae GN=ddh PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 47/172 (27.33%), Postives = 83/172 (48.26%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYK--YYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPH----------VPEELF----GL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            G+TVG+IG G+IG+AV +  + F   I  Y     P ++     Y  + EL +  H++ + CP T E   ++N E    +    +++N  RG  ++ +  + AL + ++   G+DV+ENE            + +++F       NV+L  H    T E    +AD+ L N+
Sbjct:  144 GRTVGVIGTGKIGIAVMRILKGFGMNILAYDPFKNPVVEELGGQYVELDELYAKSHVITLHCPATPENYHLLNCEAFAKMKDGVMIVNTSRGSLIDTQAAIDALKQRKIGALGMDVYENERDLFFEDKSNEVIQDDIFRRLSSCHNVLLTGHQAFLTEEALTNIADVTLSNI 315          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_SCHPO (Putative D-3-phosphoglycerate dehydrogenase OS=Schizosaccharomyces pombe GN=SPCC364.07 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 50/159 (31.45%), Postives = 75/159 (47.17%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*-KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-------------HVPEELFGL*NVVLMPHVGSGTVETR 471
            GKT+GIIG G IG  ++  AEA    + YY I    P    K   S+ EL      + +  P + ET+ +I+ +   A+     LIN  RG  V+   L+ A   G+++GA +DV+ +EP                 EL    N++L PH+G  T E +
Sbjct:  195 GKTLGIIGYGHIGSQLSVLAEAMGLHVVYYDILPIMPLGSAKQLSSLPELLHRADFVSLHVPASPETKNMISSKEFAAMKEGSYLINASRGTVVDIPALVDASKSGKIAGAAIDVYPSEPAGNGKDKFVDSLNSWTSELTHCKNIILTPHIGGSTEEAQ 353          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_PONAB (D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 58/179 (32.40%), Postives = 79/179 (44.13%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVF---ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRK--------TMADLVLGNLEAHFLNKPLLT 537
            GKT+GI+GLGRIG  VA R ++       Y     P +   +        E+   C  + V  P    T  ++N     A   KGV ++N  RG  V+E  LL AL  G+ +GA LDVF  EP     L    NV+  PH+G+ T E +            D+V G      +N   LT
Sbjct:  145 GKTLGILGLGRIGREVAIRMQSLGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTF-AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRGRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTGVVNAQALT 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_ARATH (D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 55/183 (30.05%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAF---ICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVF-ENEPHVPEELFGL*NVVLMPHVGSGT--------VETRKTMADLVLGNLEAHFLNKPLLTPVV 546
            GKT+ ++G G++G  VA+RA+     +   + Y+   +         S  +  S    + +  P T  T+++ N E    +  KGV LINV RG  ++E  L+ AL  G ++ A LDVF E  P     L    NV + PH+G+ T        +E  + +A  + G L A  +N P++ P V
Sbjct:  221 GKTLAVMGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKM-KKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDSRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEV 402          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ENT38 (Glyoxylate/hydroxypyruvate reductase A OS=Enterobacter sp. (strain 638) GN=ghrA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.481e-11
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGT 459
            T+GI+G G +G  VA+    +  P+  +S + K     + +    EL +      +L+   P T ET  IIN+ +++ L  +  L+N+ RG  V E +L+ AL  G+L GA LDV+ +EP  V   L+    V + PH+ + T
Sbjct:  138 TIGILGAGVLGSKVAEALAPWGFPLRCWSRSRKTYPGVQSFAGADELPAFLKGTRVLINLLPNTAETVGIINKGLLNQLADESYLMNLARGVHVIEEDLIDALNTGKLKGAMLDVYSSEPLPVESPLWAHPRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: PDXB_PHOPR (Erythronate-4-phosphate dehydrogenase OS=Photobacterium profundum GN=pdxB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 55/170 (32.35%), Postives = 79/170 (46.47%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEE----TRRIINREVIDALGPKGVLINVGRGPRVEERELLSALV-----EGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLN 522
            KT+GIIG G +G  +A+  +A   P        +     + + S+  + + C ++ V  P T++    T  +IN   IDAL P  +LIN  RGP  + + L  AL       G+   A LDVFE EPHV  EL  L      PH+    +E +     +V  N    FLN
Sbjct:  118 KTIGIIGAGNVGSYLAQCLDALGIPYLLNDPIKEQEGDTRQFHSLEAIKAQCDVITVHTPITKDGEYPTHHLINEAFIDALQPDAILINAARGPVTDNQALKKALQLSQSGLGKKLTAVLDVFEFEPHVDLELLPL-LAFATPHIAGYGLEGKARGTTMVF-NRYCAFLN 285          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_CITK8 (Glyoxylate/hydroxypyruvate reductase A OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ghrA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 50/144 (34.72%), Postives = 77/144 (53.47%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            TVGI+G G +G  VA+  +A+  P+  +S + K     + +    EL +      +L+   P T ET  IIN  +++ L     L+N+ RG  V E +LL+AL   +L GA LDVF  EP +P+E  L+    V + PH+ + T
Sbjct:  138 TVGIMGAGVLGAKVAEALQAWGFPLRCWSRSRKSWPGVESFAGAEELGAFLNQTRVLINLLPNTAETVGIINSGLLNQLRDGAYLLNLARGVHVNEDDLLAALNSEKLKGAMLDVFSREP-LPKESPLWQHPRVAMTPHIAAVT 280          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_ENTS8 (Glyoxylate/hydroxypyruvate reductase A OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 48/143 (33.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query:   46 VGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELASNCH---ILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE--LFGL*NVVLMPHVGSGT 459
            VG++G G +G  VA+       P+  +S + K     + +    EL++  H   +L+   P T ET  IIN +++ AL     ++N+ RG  + E +LL+AL  G++ GA LDVF+ EP +P E  L+    V + PHV + T
Sbjct:  140 VGVLGAGVLGGQVAQSLSRMGFPVRCWSRSCKALPGVESFAGPDELSAFLHGTRVLINLLPNTPETVGIINAQLLAALNDNAYVLNLARGVHLVEEDLLAALDRGKVKGAMLDVFQQEP-LPHESPLWRHPRVRITPHVAAVT 281          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
SERA_ECO575.092e-1229.71D-3-phosphoglycerate dehydrogenase OS=Escherichia ... [more]
FDH1_ORYSJ5.092e-1227.71Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
DDH_HAEIN5.092e-1227.332-hydroxyacid dehydrogenase homolog OS=Haemophilus... [more]
SERA_SCHPO8.685e-1231.45Putative D-3-phosphoglycerate dehydrogenase OS=Sch... [more]
SERA_PONAB1.134e-1132.40D-3-phosphoglycerate dehydrogenase OS=Pongo abelii... [more]
SERA_ARATH1.481e-1130.05D-3-phosphoglycerate dehydrogenase, chloroplastic ... [more]
GHRA_ENT381.481e-1132.17Glyoxylate/hydroxypyruvate reductase A OS=Enteroba... [more]
PDXB_PHOPR1.935e-1132.35Erythronate-4-phosphate dehydrogenase OS=Photobact... [more]
GHRA_CITK81.935e-1134.72Glyoxylate/hydroxypyruvate reductase A OS=Citrobac... [more]
GHRA_ENTS82.527e-1133.57Glyoxylate/hydroxypyruvate reductase A OS=Enteroba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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