DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.527e-11
Identity = 48/176 (27.27%), Postives = 85/176 (48.30%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICP-INYY-----SIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-------HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNK 525
            GK VG +G+GRIG  V +R + F C  + YY     S   +  +  +    + E+ + C ++ + CP  E+T+ + N+E+I  +     L+N  RG  V + ++  AL  G L G G DV+  +P          +  FG  N  ++PH+   +++ +K  A      +E++   K
Sbjct:  165 GKVVGTVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGN-AMVPHMSGTSLDAQKRYAAGTKAIIESYLSGK 339          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYS-IT*KPSLK----YKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFG-L*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            GKTVG +G GRIG  + +R + F C + Y+  +   P L+     KY   +  +   C ++V+  P TE+TR + N+E I  +     ++N  RG  ++ + +  A   G ++G G DV+  +P   +  +  + N  + PH    T++ +   A  V   L+ +F
Sbjct:  191 GKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYF 356          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: DHD2_LACPA (D-2-hydroxyisocaproate dehydrogenase OS=Lactobacillus paracasei PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.300e-11
Identity = 55/193 (28.50%), Postives = 83/193 (43.01%), Query Frame = 1
Query:    7 GDYKLTARFTGK-----TVGIIGLGRIGMAVAKRAEAFICPINYYS-IT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPH--------------VPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNK 525
            GDY+    F GK     TVG++G G IG    K  + F   +  Y     K       Y S+ +L     ++ +  P  E+   IIN    + + P  ++IN  R   ++ + +LS L  G+L+G G+D +E E                + +EL G+ NVVL PH+   T      M    L +L   FL K
Sbjct:  130 GDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHL-VDFLTK 321          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.310e-11
Identity = 44/166 (26.51%), Postives = 83/166 (50.00%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYS-IT*KPSLK----YKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFG-L*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            GKTVG +G GR G  + +R + F C + Y+  +   P L+     K+   +  +   C ++V+  P TE+TR + N+E I  +    +++N  RG  ++ + +  A   G ++G G DV+  +P   +  +  + N  + PH+   T++ +   A  V   L+ +F
Sbjct:  190 GKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYF 355          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: PTXD_PSEST (Phosphonate dehydrogenase OS=Pseudomonas stutzeri GN=ptxD PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 45/155 (29.03%), Postives = 75/155 (48.39%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSI----T*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPH--------VPEELFGL*NVVLMPHVGSGTVETR 471
            TVGI+G+G IG+A+A R + +   + Y+      T           +  EL ++   +++A P   +T+ ++N E++  + P  +L+N  RG  V+E  +L+AL  G+L G   DVFE E          +   L    N +  PH+GS     R
Sbjct:  147 TVGILGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTQHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPRLIDPALLAHPNTLFTPHIGSAVRAVR 301          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRA_SERP5 (Glyoxylate/hydroxypyruvate reductase A OS=Serratia proteamaculans (strain 568) GN=ghrA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.352e-11
Identity = 46/145 (31.72%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPE--ELFGL*NVVLMPHVGSGTV 462
            T+GI+G G +G +VA++  AF   +  +S + K     + +    + A+      +L+   P T ET  I+N+++   L P   LIN+ RG  + E +LL AL +G+L+ A LDVF  EP +P+    +    V + PH+ + T+
Sbjct:  139 TIGILGAGVLGKSVAQKLTAFGFNVRCWSRSPKQIDGVQSFAGAEQRAAFLDGVQLLINLLPNTPETAGILNQQLFAHLAPGAYLINLARGAHLVEDDLLQALEQGQLAAATLDVFVTEP-LPQAHPFWRHPRVTITPHIAAITL 282          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: DDH2_SCHPO (2-hydroxyacid dehydrogenase homolog 2 OS=Schizosaccharomyces pombe GN=SPAC186.02c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 45/124 (36.29%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKYYPSVF----ELASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENE 390
            GKTVG+IG G+IG  VAK  +  F C +  Y I   P  K + Y   F    E+      L + CP T  T  I+N + + AL  KGV ++N  RG  ++ + L+ A+  G++ G  +DV+E E
Sbjct:  144 GKTVGVIGTGKIGSNVAKCFKMGFGCDVLAYDIN--PDKKLENYGVQFVEQNEVLKKADFLCLHCPLTPSTTHIVNSDSL-ALMKKGVTIVNTSRGGLIDTKALVDAIDSGQVGGCAIDVYEGE 264          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
FDH_NEUCR2.527e-1127.27Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH2_ORYSJ3.300e-1127.71Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
DHD2_LACPA3.300e-1128.50D-2-hydroxyisocaproate dehydrogenase OS=Lactobacil... [more]
FDH_HORVU4.310e-1126.51Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
PTXD_PSEST7.352e-1129.03Phosphonate dehydrogenase OS=Pseudomonas stutzeri ... [more]
GHRA_SERP57.352e-1131.72Glyoxylate/hydroxypyruvate reductase A OS=Serratia... [more]
DDH2_SCHPO9.603e-1136.292-hydroxyacid dehydrogenase homolog 2 OS=Schizosac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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