DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECO57 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 GN=tkrA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECO55 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain 55989 / EAEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.209e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 61/156 (39.10%), Postives = 84/156 (53.85%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVAKRA+AF   I Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN GRGP V E  L+ AL + ++ GA LDV+E EP + E L  L NVV+ PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVAKRAKAFDMDILYTGPHQKKEKEREIGAKYVDLNTLLENADFITINAAYNPDLHHMIDTEQFKLMKSTAYLINAGRGPIVNEEALVKALEDKQIEGAALDVYEFEPEITEGLKSLDNVVITPHIGNATYEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 67/168 (39.88%), Postives = 91/168 (54.17%), Query Frame = 1
Query:   19 LTARFTGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEA 510
            L     GKT+GI+G+GRIG  VA+  +AF   I Y+S + K  ++ +    Y S+ +L     IL +  P T+ETR +I    +  +    +L+N GRG  V+   L+ AL EG ++ A LDVFE EP  P   L    NVVL PH  S T ETR  MA +   NL A
Sbjct:  145 LGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRSRKREIEKELGAEYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRETRLRMAMMAAENLVA 312          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALTY (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhimurium GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALTI (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella typhi GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALSV (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella schwarzengrund (strain CVM19633) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GHRB_ECO571.209e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO551.209e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO451.209e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO271.209e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO241.209e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
Y752_STAHJ1.579e-2139.10Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
GYAR_AERPE1.579e-2139.88Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
GHRB_SALTY1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALTI1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALSV1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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