DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALPC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella paratyphi C (strain RKS4594) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALNS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella newport (strain SL254) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALHS (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella heidelberg (strain SL476) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALEP (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella enteritidis PT4 (strain P125109) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALDC (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella dublin (strain CT_02021853) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALCH (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella choleraesuis GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALA4 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella agona (strain SL483) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 62/160 (38.75%), Postives = 86/160 (53.75%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 63/160 (39.38%), Postives = 89/160 (55.62%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIG+A+A+RA   F  PI Y +       + ++   Y  +  L +    + V  P T+ET  +I  E    +    + IN GRGP V+E  L++AL  G +  AGLDVFE EP   +  L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFNARYCDLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVVDENALIAALQSGEIHAAGLDVFEQEPLSKDSPLLTMKNVVALPHIGSATHETRYNMAACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL5 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.579e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
[Close]
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SHIDS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ghrB PE=3 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.062e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1 
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GHRB_SALPC1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALNS1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALHS1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALEP1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALDC1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALCH1.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_SALA41.579e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
GHRB_ENTS81.579e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ECOL51.579e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHIDS2.062e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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