DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SHIF8 (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri serotype 5b (strain 8401) GN=ghrB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.694e-21
Identity = 63/160 (39.38%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHVAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SHIFL (Glyoxylate/hydroxypyruvate reductase B OS=Shigella flexneri GN=ghrB PE=3 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 3.518e-21
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+R    F  PI Y +       + ++   Y  +  L      + +  P T+ET  +   E    +    + IN GRGP V+E  L++AL +G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  MA   + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSMANVVAVPHIGSATHETRYGMAACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 65/178 (36.52%), Postives = 97/178 (54.49%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAF-ICPINYYSIT*KPSLKYK--YYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPLLTPVV*LFHE 561
            GKTVGI+GLGRIG  + +R + F      Y++    PS +     Y    E      I+ V  P    T  +IN E I+ +    V++N  RG  ++E+ +  AL  G++  AGLDVFE EP + +EL  +  V+ +PH+G+ +VETRK M +LV+ N +   L   +LT V  L +E
Sbjct:  163 GKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVIDEQAMTDALRSGKIRSAGLDVFEYEPKISKELLSMSQVLGLPHMGTHSVETRKKMEELVVENAKNVILTGKVLTIVPELQNE 340          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y606_STAS1 (Putative 2-hydroxyacid dehydrogenase SSP0606 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP0606 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 60/156 (38.46%), Postives = 85/156 (54.49%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA+AF   I Y     K   + +    Y  +  L  N   + +           I++   + + P   LIN  RGP V E+ L+ AL +  + GA LDVFE EP + +EL  L NVV+ PH+G+ T E+R  M+ +V
Sbjct:  145 SGKTIGIIGLGEIGSAVARRAKAFDMNILYTGPHQKVDKEREIGAKYVDLETLLKNADFVTINAAYNPSLHHQIDKAQFEMMKPTSYLINASRGPIVHEKALVQALKDKEIEGAALDVFEFEPEINDELKTLDNVVITPHIGNATFESRDMMSKIV 300          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GHRB_SALG2 (Glyoxylate/hydroxypyruvate reductase B OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=ghrB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.595e-21
Identity = 61/160 (38.12%), Postives = 85/160 (53.12%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            KT+GI+G+GRIGMA+A+RA   F  P+ Y++       + ++   Y  +  L      + V  P T ETR +        +    + IN GRGP  +E  L++AL  G +  AGLDVFE EP  V   L  + NVV +PH+GS T ETR  M    + NL
Sbjct:  146 KTLGIVGMGRIGMALAQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLFGATQFARMKSSAIFINAGRGPVADENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLNMSNVVAVPHIGSATHETRYNMMACAVDNL 305          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
GHRB_SHIF82.694e-2139.38Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
GHRB_SHIFL3.518e-2138.75Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]
YN14_YEAST4.595e-2136.52Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
Y606_STAS14.595e-2138.46Putative 2-hydroxyacid dehydrogenase SSP0606 OS=St... [more]
GHRB_SALG24.595e-2138.13Glyoxylate/hydroxypyruvate reductase B OS=Salmonel... [more]
Y2577_STAA86.001e-2137.18Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2296_STAAC6.001e-2137.18Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA36.001e-2137.18Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW6.001e-2137.18Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS6.001e-2137.18Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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