DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.001e-21
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 58/156 (37.18%), Postives = 82/156 (52.56%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL    + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIVHEQALVQALKNNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.024e-20
Identity = 58/168 (34.52%), Postives = 89/168 (52.98%), Query Frame = 1
Query:   28 RFTGKTVGIIGLGRIGMAVAKRAEAFICPINYY-----SIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            +   KT+GI G G IG A+AKRA+ F   I+Y+     S + + S +  ++ S+  L S      +  P T ETR   N+  I +L    +++N  RG  V+   +++AL  GRL+ AG DVF  EP++ E  + L N  L PH+GS   + R+ MA      ++A F
Sbjct:  145 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAHQANDLIDALF 312          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 58/156 (37.18%), Postives = 83/156 (53.21%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVA+RA AF   + Y     K   + +    Y  +  L  N   + +      +   +I+ E    +     LIN  RGP V E+ L+ AL +  + GA LDV+E EP + ++L  L NVVL PH+G+ T E R  M+ +V
Sbjct:  144 SGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIVHEQALVQALKDNEIEGAALDVYEFEPDITDDLKSLNNVVLTPHIGNATFEARDMMSKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.337e-20
Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAF-ICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL 531
            T  TVGIIGLGRIG A+A+R + F +    Y     +P    ++   + S  ELA+    +VVAC  T  T  + N++    +    V IN+ RG  V + +L  AL  G+++ AGLDV   EP      L  L N V++PH+GS T  TR TM+ L   NL A    +P+
Sbjct:  152 TQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.746e-20
Identity = 63/176 (35.80%), Postives = 87/176 (49.43%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPI----NYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVL--------GNLEAHFLNKP 528
            GKT+G+IGLGRIG  V KRA+AF   I     Y       S+  +    + EL      + +  P T +TR II RE I  +    +++N  RG  ++E+ L  AL EG++  A LDVFE EP     L  L NV+  PH G+ T E +K    +V         G L  + +N P
Sbjct:  139 GKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKIRAAALDVFEEEPPKDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKVLRGELAENVVNMP 314          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 60/156 (38.46%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVAKRA AF   + Y     K   +      Y  +  L  N   + +          +I+ E  + +     LIN GRGP V E+ L+ AL    + GA LDV+E EP + + L    NVVL PH+G+ T E R  MA +V
Sbjct:  144 SGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIVNEQSLVEALDNKAIEGAALDVYEFEPEITDALKSFKNVVLTPHIGNATFEARDMMAKIV 299          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: TKRA_DICDI (Probable 2-ketogluconate reductase OS=Dictyostelium discoideum GN=tkrA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.280e-20
Identity = 58/160 (36.25%), Postives = 90/160 (56.25%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEP-HVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNL 504
            K VGIIG+GRIG  +AKR    F   + YYS +    ++  Y   +  +  + S    + V  P ++ET+   +      +    + IN GRG  V+E  L+ AL  G+++GAGLDVFE EP +   +L  L N+VL+PH+G+ T+ET+  M++  + NL
Sbjct:  155 KKVGIIGMGRIGEVLAKRCRMGFDMEVAYYSRSRHLKVEELYDAKHQDLDTILSTSDFICVVLPGSQETKHFFSFGQFSKMKNSAIFINAGRGMTVDEVALIDALETGKIAGAGLDVFEKEPLNKDSKLLTLDNIVLLPHIGTSTIETQHIMSECAVNNL 314          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.890e-20
Identity = 60/156 (38.46%), Postives = 80/156 (51.28%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLV 492
            +GKT+GIIGLG IG AVAKRA AF   + Y     K   +      Y  +  L  N   + +          +I+ E  + +     LIN GRGP V E+ L+ AL    + GA LDV+E EP + + L    NVVL PH+G+ T E R  MA +V
Sbjct:  144 SGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIVNEQSLVEALDNKVIEGAALDVYEFEPEITDALKSFKNVVLTPHIGNATFEARDMMAKIV 299          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
Y2178_STAAB6.001e-2137.18Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]
Y2389_STAAR1.024e-2037.18Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
DHGY_HYPME1.024e-2034.52Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
Y2305_STAAM1.337e-2037.18Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2098_STAAN1.337e-2037.18Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
GRHPR_HUMAN1.337e-2037.43Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
SERA_METJA1.746e-2035.80D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
Y1888_STAEQ2.280e-2038.46Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
TKRA_DICDI2.280e-2036.25Probable 2-ketogluconate reductase OS=Dictyosteliu... [more]
Y1879_STAES3.890e-2038.46Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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