DY258075

Overview
NameDY258075
Unique NameDY258075
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: YEAA_SCHPO (Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Schizosaccharomyces pombe GN=SPACUNK4.10 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.132e-19
Identity = 61/167 (36.53%), Postives = 92/167 (55.09%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYK--YYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKPL 531
            GKT+GI+GLG IG  +AKRA AF   I Y++ T  P  + +   + S  +L +   +L +  P    TR II +     +    V++N  RG  ++E  L+ AL EG +  AGLDVFE EP +   L     V+L+PH+G+ ++ET+  M   VL N++   +N  L
Sbjct:  156 GKTLGILGLGGIGKTMAKRARAFDMKIVYHNRTPLPEEEAEGAEFVSFDDLLAKSDVLSLNLPLNAHTRHIIGKPEFQKMKRGIVIVNTARGAVMDEAALVEALDEGIVYSAGLDVFEEEPKIHPGLLENEKVILLPHLGTNSLETQYKMECAVLMNVKNGIVNDSL 322          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: GRHPR_MOUSE (Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.521e-19
Identity = 57/161 (35.40%), Postives = 89/161 (55.28%), Query Frame = 1
Query:   43 TVGIIGLGRIGMAVAKRAEAF-ICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEA 510
            TVGI+GLGRIG A+A+R + F +    Y     +P    ++   +  + +LA+    +VV+C  T +T  + +++    +    + IN+ RG  V + +L  AL  G+++ AGLDV   EP  P   L  L N V++PH+GS T +TR TM+ L   NL A
Sbjct:  155 TVGIVGLGRIGQAIARRLKPFGVQRFLYTGRQPRPQEAAEFQAEFVPIAQLAAESDFIVVSCSLTPDTMGLCSKDFFQKMKNTAIFINISRGDVVNQEDLYQALASGQIAAAGLDVTTPEPLPPSHPLLTLKNCVILPHIGSATYKTRNTMSLLAANNLLA 315          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 3.293e-19
Identity = 62/153 (40.52%), Postives = 90/153 (58.82%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYS--IT*KPSLKYKYYPSVFE-LASNCHILVVACPQTEETRRIINREVIDALGPKGV-LINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMA 483
            GKT+GI+GLGRIG  +A+RA AF   ++ +   +T + + K       FE +  +  I+ V  P T+ET+ ++N+E I A   KGV LIN  RG  ++E  LL AL  G ++GA LDVFE EP V  +L     V+  PH+G+ T E +  +A
Sbjct:  138 GKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETI-AKTKKGVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNKLVDHPLVIATPHLGASTKEAQLNVA 289          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.634e-18
Identity = 57/163 (34.97%), Postives = 84/163 (51.53%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELAS---NCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHF 516
            GKT+GIIG+GRIG  V  R +AF   I  Y          +   +V +L +      I+ +  P T ETR +I+ +    +     ++N  RG  ++E  L  AL +G ++GA LDVFE EP     L  L NVVL PH+G+ T E ++  A +V   ++  F
Sbjct:  141 GKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRALKDGEIAGAALDVFEEEPPEGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVF 303          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETR 471
            GKTVG++GLGRIG  VA+R  AF   +  Y     P+   +      S+ +L +    + V  P+T ET  +I++E +    P  +++N  RG  V+E  L  A+  G +  AGLDVF  EP     LF L  VV+ PH+G+ T E +
Sbjct:  141 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 288          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.755e-18
Identity = 54/148 (36.49%), Postives = 79/148 (53.38%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETR 471
            GKTVG++GLGRIG  VA+R  AF   +  Y     P+   +      S+ +L +    + V  P+T ET  +I++E +    P  +++N  RG  V+E  L  A+  G +  AGLDVF  EP     LF L  VV+ PH+G+ T E +
Sbjct:  141 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 288          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: YOAD_BACSU (Putative 2-hydroxyacid dehydrogenase yoaD OS=Bacillus subtilis GN=yoaD PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.110e-18
Identity = 57/148 (38.51%), Postives = 78/148 (52.70%), Query Frame = 1
Query:   34 TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPE----ELFGL*NVVLMPHVGSGTVE 465
            TGKTVG+IG G +G  +AK   AF C I YY    +         S+  + S+  I+ V  P+TEET  +I+R+  D +    + +N  R   V   +LL  L E ++SGA LDVF +EP  PE    EL  L NV+  PH+   T E
Sbjct:  162 TGKTVGMIGFGAVGQRIAKLLTAFDCKIKYYDPYIQDDHPLYEKASLKTVFSDSDIVSVHLPRTEETLGLIDRQYFDLMKESAIFVNTSRAVVVNREDLLFVLKEHKISGAILDVFYHEP--PEESDYELISLPNVLATPHLAGATFE 307          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.082e-17
Identity = 54/148 (36.49%), Postives = 77/148 (52.03%), Query Frame = 1
Query:   37 GKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELFGL*NVVLMPHVGSGTVETR 471
            GKTVG++GLGRIG  VA R  AF   +  Y     P+   +      S  +L +    + V  P+T ET  +I++E +    P  +++N  RG  V+E  L  A+  G +  AGLDVF  EP     LF L  VV+ PH+G+ T E +
Sbjct:  141 GKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEVALADAVRSGHVRAAGLDVFATEPCTDSPLFELSQVVVTPHLGASTAEAQ 288          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: TKRA_BACSU (Probable 2-ketogluconate reductase OS=Bacillus subtilis GN=yvcT PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.025e-17
Identity = 55/162 (33.95%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   40 KTVGIIGLGRIGMAVAKRAE-AFICPINYYSIT*KPSLKYKY---YPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEE-LFGL*NVVLMPHVGSGTVETRKTMADLVLGNLEA 510
            +T+GIIG+GRIG   A+RA+  F   + Y++   K   +      Y  +  L      +++  P T+ET  +I       +    + +N+ RG  V+E+ L+ AL EG + GAGLDV+E EP   +  L  L NV L+PH+GS T + R  M      N+ A
Sbjct:  149 QTLGIIGMGRIGEQAARRAKFGFDMEVLYHNRHRKQETEDSIGVKYAELDTLLEQSDFILLITPLTDETYHMIGEREFKLMKNSAIFVNISRGKTVDEKALIRALQEGWIRGAGLDVYEKEPVTQDNPLLQLDNVTLLPHIGSATAKVRFNMCKQAAENMLA 310          
BLAST of DY258075 vs. ExPASy Swiss-Prot
Match: DHGY_METEA (Glycerate dehydrogenase OS=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) GN=hprA PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.257e-17
Identity = 56/189 (29.63%), Postives = 93/189 (49.21%), Query Frame = 1
Query:    1 RKGDYKLTARF----------TGKTVGIIGLGRIGMAVAKRAEAFICPINYYSIT*KPSLKYKYYPSVFELASNCHILVVACPQTEETRRIINREVIDALGPKGVLINVGRGPRVEERELLSALVEGRLSGAGLDVFENEPHVPEELF---GL*NVVLMPHVGSGTVETRKTMADLVLGNLEAHFLNKP 528
            R+GD+  + +F           G T+GIIG G +G ++AKRAEA    +  + +  +  L       +  + +   ++ +  P T +T+ +I  E +  +    +LIN  RG  V+E  LL AL +G + GAG DV   EP     +     L N+++ PHV   + E  + +AD ++ N+EA    KP
Sbjct:  125 RRGDWNKSKQFCYFDYPIYDIAGSTLGIIGYGALGKSIAKRAEALGMKVLAFDVFPQDGLV-----DLETILTQSDVITLHVPLTPDTKNMIGAEQLKKMKRSAILINTARGGLVDEAALLQALKDGTIGGAGFDVVAQEPPKDGNILCDADLPNLIVTPHVAWASKEAMQILADQLVDNVEAFVAGKP 308          
The following BLAST results are available for this feature:
BLAST of DY258075 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
YEAA_SCHPO1.132e-1936.53Putative 2-hydroxyacid dehydrogenase UNK4.10 OS=Sc... [more]
GRHPR_MOUSE2.521e-1935.40Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
SERA_BACSU3.293e-1940.52D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
SERA_METTH1.634e-1834.97D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_MYCTU4.755e-1836.49D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO4.755e-1836.49D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
YOAD_BACSU8.110e-1838.51Putative 2-hydroxyacid dehydrogenase yoaD OS=Bacil... [more]
SERA_MYCLE3.082e-1736.49D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
TKRA_BACSU4.025e-1733.95Probable 2-ketogluconate reductase OS=Bacillus sub... [more]
DHGY_METEA5.257e-1729.63Glycerate dehydrogenase OS=Methylobacterium extorq... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DF03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258075 ID=DY258075; Name=DY258075; organism=Citrus clementina; type=EST; length=754bp
AGGAAGGGGGATTATAAGCTGACCGCTAGGTTCACTGGAAAAACAGTTGG
CATTATTGGGCTAGGAAGAATTGGCATGGCAGTTGCTAAGAGAGCTGAAG
CATTTATCTGCCCAATCAACTACTACTCTATAACATAGAAACCAAGTTTG
AAATACAAATACTACCCGAGTGTATTTGAGTTGGCCTCGAACTGTCACAT
TCTGGTCGTTGCATGCCCACAAACGGAAGAGACCCGCCGTATCATTAATC
GGGAAGTCATTGATGCTTTGGGACCAAAAGGGGTTCTCATCAACGTTGGG
AGGGGTCCTCGCGTGGAGGAACGTGAACTGTTGTCGGCACTGGTTGAAGG
CCGTTTAAGCGGAGCTGGGCTCGATGTGTTTGAAAATGAGCCTCATGTAC
CTGAGGAGCTCTTTGGTCTATAAAATGTGGTCCTTATGCCCCATGTAGGA
AGTGGCACAGTGGAAACCCGCAAAACCATGGCTGACCTTGTACTTGGGAA
TTTGGAAGCTCATTTTCTGAACAAACCGCTGCTTACTCCAGTAGTTTGAT
TGTTTCATGAAAGATGCAAGTTTAAGACCGATTGACGGCTCCATCCTGCT
GCTGCTACTTAAGTATGTTTTATCTAAAGAACATTGTTTTAAGGCCCTGG
TACAATTTGTCCCGAAGCCTTAGCCAATTACTTTAAGATCTTCAGCAACA
TGTTTTAATTAAATTCTTAAATTGCAGCAGTTGCATATGATGTTGATTTG
ACAT
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