DY258085

Overview
NameDY258085
Unique NameDY258085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2BS3_PARAN (Histone H2B.3, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.289e-33
Identity = 67/90 (74.44%), Postives = 82/90 (91.11%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   59 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 148          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B2_KLULA (Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B1_KLULA (Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.296e-33
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2BS2_PARAN (Histone H2B.2, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.610e-33
Identity = 67/90 (74.44%), Postives = 82/90 (91.11%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIAGEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B_CRYNE (Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 66/91 (72.53%), Postives = 83/91 (91.21%), Query Frame = 2
Query:  227 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            VE+Y  YI+KVLKQVHPD GIS+KAM I+NSF++DIFE++A EAS+LA YN + TI+SREIQT+VRL+LPGEL+KHA+SEGTKAVTK++SS
Sbjct:   48 VESYSSYIYKVLKQVHPDTGISNKAMAILNSFVSDIFERIATEASKLASYNHRSTISSREIQTSVRLILPGELSKHAISEGTKAVTKYSSS 138          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2BS2_STRPU (Histone H2B.2, sperm OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.250e-32
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+NDIF ++A EASRL R N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDIFGRIAGEASRLTRANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B2_PICGU (Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B1_PICGU (Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.784e-32
Identity = 66/90 (73.33%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+ND+FE++A EASRL   N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   52 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLTSANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 141          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2BS2_LYTPI (Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 1.058e-31
Identity = 65/90 (72.22%), Postives = 81/90 (90.00%), Query Frame = 2
Query:  230 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            E+Y  YI++VLKQVHPD GISS+ M +MNSF+ND+FE++A EASRL + N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   53 ESYGSYIYRVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 142          
The following BLAST results are available for this feature:
BLAST of DY258085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BS3_PARAN3.289e-3374.44Histone H2B.3, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_KLULA4.296e-3374.44Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2B1_KLULA4.296e-3374.44Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2BS2_PARAN5.610e-3374.44Histone H2B.2, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B_CRYNE1.250e-3272.53Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=... [more]
H2BS2_STRPU1.250e-3275.56Histone H2B.2, sperm OS=Strongylocentrotus purpura... [more]
H2B2_PICGU1.632e-3273.33Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=... [more]
H2B1_PICGU1.632e-3273.33Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=... [more]
H2BS2_PSAMI2.784e-3273.33Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]
H2BS2_LYTPI1.058e-3172.22Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DG10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258085 ID=DY258085; Name=DY258085; organism=Citrus clementina; type=EST; length=678bp
GGACCCGAACTCCTAATATCATTTTCTATCAAATTCAGAAGAATCTTCTC
ACGCCCTTCAGTTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAG
AAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAA
GAGGCCGAAAGCCGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCGAGA
AAAAGAAGAGGAAGTTGAAGAAGAATGTGGAGACGTACAAGATCTACATT
TTCAAGGTCCTGAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGC
CATGGGCATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCC
AAGAGGCGTCTCGTCTCGCTAGGTACAACAAGAAGCCGACGATCACGTCG
AGGGAGATCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAA
GCACGCCGTGTCGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTT
GATTTTGTGCAATTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAAATT
GTTCCTTTCGTTACTTTTTAGCCGCCCCGCCTAGCCTAGGGTTTGCTCCT
GTTAATGCTTCTTATGGACAGATTAATGAAAACTTATTGTCTTCTAAAAT
CGTGATCTGATTCTCTTTGGGTTCTGAC
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