DY258085

Overview
NameDY258085
Unique NameDY258085
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B8_ORYSI (Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B.8 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  185 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B6_ORYSI (Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B.6 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.473e-41
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  185 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   49 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 153          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSJ (Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  224 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B2_ORYSI (Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B.2 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  224 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   59 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSJ (Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  185 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   48 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B9_ORYSI (Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B.9 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.513e-41
Identity = 87/105 (82.86%), Postives = 93/105 (88.57%), Query Frame = 2
Query:  185 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   48 GEGKKAGRKKGKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 152          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSJ (Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  224 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B5_ORYSI (Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B.5 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 2
Query:  224 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA EA++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   64 SVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAEAAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 155          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B5_ARATH (Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480 PE=1 SV=3)

HSP 1 Score: 168.318 bits (425), Expect = 3.281e-41
Identity = 88/109 (80.73%), Postives = 94/109 (86.24%), Query Frame = 2
Query:  173 ISKDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            I+K+GG           + ETYKIY+FKVLKQVHPDIGIS KAMGIMNSFIND FEK+A E+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   20 ITKEGGSERKKKTKK--STETYKIYLFKVLKQVHPDIGISGKAMGIMNSFINDTFEKIALESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 126          
BLAST of DY258085 vs. ExPASy Swiss-Prot
Match: H2B3_WHEAT (Histone H2B.3 OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.286e-41
Identity = 88/108 (81.48%), Postives = 96/108 (88.89%), Query Frame = 2
Query:  176 SKDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 499
            SK+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   32 SKEGGD-KKGKKKSKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAGESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSA 138          
The following BLAST results are available for this feature:
BLAST of DY258085 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B8_ORYSI1.473e-4183.81Histone H2B.8 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B6_ORYSI1.473e-4183.81Histone H2B.6 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B2_ORYSJ1.924e-4193.48Histone H2B.2 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B2_ORYSI1.924e-4193.48Histone H2B.2 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B9_ORYSJ2.513e-4182.86Histone H2B.9 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B9_ORYSI2.513e-4182.86Histone H2B.9 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ORYSJ3.281e-4192.39Histone H2B.5 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B5_ORYSI3.281e-4192.39Histone H2B.5 OS=Oryza sativa subsp. indica GN=H2B... [more]
H2B5_ARATH3.281e-4180.73Histone H2B.5 OS=Arabidopsis thaliana GN=At3g09480... [more]
H2B3_WHEAT4.286e-4181.48Histone H2B.3 OS=Triticum aestivum PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAB2DG10ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258085 ID=DY258085; Name=DY258085; organism=Citrus clementina; type=EST; length=678bp
GGACCCGAACTCCTAATATCATTTTCTATCAAATTCAGAAGAATCTTCTC
ACGCCCTTCAGTTTTTCTCGTCAAAAGGAACGATGGCGCCGAAAGCCGAG
AAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGAGAAAGCCCCAGCCGAGAA
GAGGCCGAAAGCCGAGAAGAAGATCTCGAAAGATGGCGGCGGCGTCGAGA
AAAAGAAGAGGAAGTTGAAGAAGAATGTGGAGACGTACAAGATCTACATT
TTCAAGGTCCTGAAGCAGGTTCATCCCGATATCGGTATCTCCAGCAAGGC
CATGGGCATCATGAACAGTTTCATCAACGATATCTTCGAGAAATTAGCCC
AAGAGGCGTCTCGTCTCGCTAGGTACAACAAGAAGCCGACGATCACGTCG
AGGGAGATCCAGACCGCCGTGAGATTGGTCTTGCCCGGTGAATTGGCCAA
GCACGCCGTGTCGGAGGGGACCAAGGCCGTTACCAAGTTCACGAGCTCTT
GATTTTGTGCAATTTTTTGTCTTGTTAGTGTTCCGTGTTCTTTTGAAATT
GTTCCTTTCGTTACTTTTTAGCCGCCCCGCCTAGCCTAGGGTTTGCTCCT
GTTAATGCTTCTTATGGACAGATTAATGAAAACTTATTGTCTTCTAAAAT
CGTGATCTGATTCTCTTTGGGTTCTGAC
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