DY258098

Overview
NameDY258098
Unique NameDY258098
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1343
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1044 contig Ccv1_Contig1044:1..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_AERPE (Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.315e-18
Identity = 80/276 (28.99%), Postives = 128/276 (46.38%), Query Frame = 1
Query:  115 ITRVLFCGPHFPASHNYTKEYLQNYPSIQVDVIPISDAPDVIANYHLCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIE-----QKKLG----VPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            +TR +F       S  Y  E    Y     + + +S A +  A Y L    T R+D +++S+A +++++ Q  VG + +D+  ATR GI V   PG +T    + AE T  L+L   R+  E    +      + + G    +  G  L GKT+ ILG G IG  +A+  + FG++II   RS                K  I  +L  E    ED+ +    +D++   L L  +T  ++ +S L  MKK ++LVN  RG ++D  A+   L  G
Sbjct:    8 VTREVFPEALELLSKYYDVEVWDKYQPPPYETL-LSKAREADALYTLL---TDRIDCDLLSQAPRLRIVAQMAVGFDNIDVECATRLGIYVTNTPGVLT---EATAEFTWALILAAARRVVEADHFVRWGEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIGKAFGMRIIYHSRS---------------RKREIEKELGAEYRSLEDLLR---ESDILSIHLPLTDETRHLIGESELKLMKKTAILVNTGRGAIVDTGALVKALREG 258          

HSP 2 Score: 28.4906 bits (62), Expect = 3.315e-18
Identity = 13/41 (31.71%), Postives = 22/41 (53.66%), Query Frame = 2
Query:  926 GW----GIDVAWTDPFDPHDPILKFKNVLINLKVGSVTKHS 1036
            GW     +DV   +P +P+ P+  FKNV++     S T+ +
Sbjct:  258 GWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAASATRET 298          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.485e-18
Identity = 68/225 (30.22%), Postives = 115/225 (51.11%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVPT--GETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHL 921
            L V    ++  +VI +A ++K+I + GVG++ +D+ AAT  GI V   P     ++ S AELT+ LML   R   +   ++++ +       G  L GKT+ ++G G IG ++ KR + FG+ II                  +A   G+  +LVD      DI +    AD +   + L  +T  I+ +  ++ MKK +++VN ARGGL+D +A+   L+ G +
Sbjct:   45 LVVRSGTKVTRDVIEKAEKLKVIGRAGVGVDNIDVEAATEKGIIVVNAPD---ASSISVAELTMGLMLAAARNIPQATASLKRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKE---------VAESMGV--ELVD------DINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYEALKEGKI 249          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 8.470e-18
Identity = 66/218 (30.28%), Postives = 109/218 (50.00%), Query Frame = 1
Query:  292 ISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRK----QNEMRMAIEQKKLGVP-TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCH--EDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLG 924
            I +A  +KL++  G+G + +D+ AA   G+ VA + G    N  S AE  +  +L L+R      N++    E    G+      L GKT+  +G G IG  L +RL+PFG  ++        H ++            +  +L  E G    ED+ +     DV+V  + L ++T G+ NK  +  +KKG L+VN ARG +++ +A+   +ESGH+G
Sbjct:  114 IKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGS---NVVSVAEDELMRILILMRNFVPGYNQVVKG-EWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLY-------HDRLQ-----------MAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIG 309          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_PIG (D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.106e-17
Identity = 73/226 (32.30%), Postives = 112/226 (49.56%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ S+VI+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  ++L L R+  +   ++     E+KK     G  L GK + ILG G IG E+A R++ FG+K I      A     S     L +               E+I+    + D +     L   T G++N S  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPN---GNSLSAAELTCGMILCLARQIPQATASMKDGKWERKKF---MGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIIAPEVSASFGVQQLPL---------------EEIWP---LCDFITVHTPLLPSTTGLLNDSTFALCKKGVRVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_THEGJ (Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.887e-17
Identity = 65/233 (27.90%), Postives = 112/233 (48.07%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+D  V   A +++++  + VG + VD+  ATR GI V   P  +T   A  A   +      L + +    + E K+ G+        G  + GKT+ I+GFG IG  +A+R + FG++I+   R+    ++               ++L  E    E++ K    +D VV  + L K+T  ++ +  L  MK  ++LVNIARG ++D EA+   L+ G +   G
Sbjct:   49 LVTMLSERIDGEVFDNAPRLRIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLATARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAE---------------EELKAEFKPLEELLK---ESDFVVLAVPLTKETYHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAG 263          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_PANTR (D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.219e-17
Identity = 70/226 (30.97%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ ++VI+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I      +     S     L +               E+I+    + D +     L   T G++N +  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIW---PLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_HUMAN (D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 3.219e-17
Identity = 70/226 (30.97%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAI-----EQKKLGVPTGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ ++VI+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++ L R+  +   ++     E+KK     G  L GKT+ ILG G IG E+A R++ FG+K I      +     S     L +               E+I+    + D +     L   T G++N +  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKF---MGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPL---------------EEIW---PLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: GYAR_PYRFU (Glyoxylate reductase OS=Pyrococcus furiosus GN=gyaR PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.219e-17
Identity = 67/236 (28.39%), Postives = 118/236 (50.00%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLR---KQNEMRMAIEQKKLGVP------TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESGHLGRLG 933
            L  + + R+D  V   A +++++  + VG + +D+  ATR GI V   P DV  NA   A+    L+L   R   K ++   + E K+ G+        G  L GKT+ I+GFG IG  +A+R + F ++I+   R+  S ++       L  +   +++++ E             +D V+  + L K+T  ++N+  L  MK  ++LVNIARG ++D +A+   L+ G +   G
Sbjct:   49 LVTMLSERIDQEVFENAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTP-DVLTNAT--ADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQAIARRAKGFNMRILYYSRTRKSQAE-----KELGAEYRPLEEVLKE-------------SDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAG 263          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_RAT (D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.204e-17
Identity = 67/223 (30.04%), Postives = 111/223 (49.78%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ ++VI+ A +++++ + G G++ VD+ AATR G+ V   P    GN+ S AELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ FG+K +               S  +A   G+    ++E            + D +     L   T G++N S  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTP---NGNSLSAAELTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYD---------PIISPEVAASFGVQQLPLEE---------IWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 252          
BLAST of DY258098 vs. ExPASy Swiss-Prot
Match: SERA_MOUSE (D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.204e-17
Identity = 68/223 (30.49%), Postives = 111/223 (49.78%), Query Frame = 1
Query:  253 LCVVKTMRLDSNVISRANQMKLIMQFGVGLEGVDINAATRCGIKVARIPGDVTGNAASCAELTIYLMLGLLRKQNEMRMAIEQKKLGVP--TGETLLGKTVFILGFGNIGVELAKRLRPFGVKIIATKRSWASHSQVSCQSSALAVKNGIIDDLVDEKGCHEDIFKFASMADVVVCCLSLNKQTAGIVNKSFLSSMKKGSLLVNIARGGLLDYEAIAHYLESG 915
            L V    ++ ++VI+ A +++++ + G G++ VD+ AATR GI V   P    GN+ S AELT  +++ L R+  +   +++  K       G  L GKT+ ILG G IG E+A R++ FG+K +               S  +A   G+    ++E            + D +     L   T G++N S  +  KKG  +VN ARGG++D  A+   L+SG
Sbjct:   51 LIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTP---NGNSLSAAELTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYD---------PIISPEVAASFGVQQLPLEE---------IWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLRALQSG 252          
The following BLAST results are available for this feature:
BLAST of DY258098 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
GYAR_AERPE3.315e-1828.99Glyoxylate reductase OS=Aeropyrum pernix GN=gyaR P... [more]
SERA_METJA6.485e-1830.22D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
FDH_ARATH8.470e-1830.28Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
SERA_PIG1.106e-1732.30D-3-phosphoglycerate dehydrogenase OS=Sus scrofa G... [more]
GYAR_THEGJ1.887e-1727.90Glyoxylate reductase OS=Thermococcus gammatolerans... [more]
SERA_PANTR3.219e-1730.97D-3-phosphoglycerate dehydrogenase OS=Pan troglody... [more]
SERA_HUMAN3.219e-1730.97D-3-phosphoglycerate dehydrogenase OS=Homo sapiens... [more]
GYAR_PYRFU3.219e-1728.39Glyoxylate reductase OS=Pyrococcus furiosus GN=gya... [more]
SERA_RAT4.204e-1730.04D-3-phosphoglycerate dehydrogenase OS=Rattus norve... [more]
SERA_MOUSE4.204e-1730.49D-3-phosphoglycerate dehydrogenase OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AA08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258098 ID=DY258098; Name=DY258098; organism=Citrus clementina; type=EST; length=1343bp
GGGAAAAGGCCTCTGGATTTATTCAATATCTGCAGTCTCTTCAGTTCACA
AGGGTAACTGGGCGGATTTGATATAAGCAAAATGGAGGGAATGGCTAGGA
GCAGTGATAAAAACATCACCCGTGTTCTCTTTTGCGGTCCACATTTCCCT
GCTTCCCATAATTATACTAAAGAATACTTGCAAAATTACCCTTCCATTCA
GGTTGATGTGATCCCCATTAGTGATGCGCCTGATGTCATAGCAAACTACC
ATCTTTGTGTGGTAAAAACCATGCGGCTAGATTCAAATGTTATATCTCGT
GCGAATCAAATGAAGCTTATAATGCAGTTTGGGGTTGGCCTGGAAGGTGT
GGATATTAATGCTGCTACAAGATGCGGCATCAAAGTTGCTAGAATCCCAG
GTGACGTGACTGGAAATGCTGCATCGTGTGCTGAATTGACCATATATCTA
ATGCTGGGCCTTCTCAGAAAGCAGAATGAGATGAGAATGGCCATAGAGCA
AAAAAAACTTGGAGTGCCAACTGGTGAGACACTACTTGGGAAAACTGTAT
TTATCTTGGGCTTTGGAAATATTGGGGTTGAATTGGCAAAGCGCTTGCGA
CCATTTGGTGTGAAAATTATTGCCACAAAAAGGAGTTGGGCTTCTCATTC
TCAAGTTTCTTGCCAATCTAGTGCACTTGCAGTAAAAAACGGGATCATTG
ATGATTTGGTTGATGAGAAGGGTTGTCATGAAGATATTTTTAAGTTTGCT
AGCATGGCCGACGTGGTTGTTTGTTGCCTGAGTTTAAATAAGCAGACGGC
TGGCATTGTAAACAAGTCATTTCTATCTTCAATGAAAAAGGGTTCTCTTC
TGGTGAATATTGCTCGAGGAGGTCTTTTAGACTATGAGGCCATTGCTCAT
TACCTCGAATCTGGCCACTTGGGGAGGCTGGGGCATTGATGTTGCTTGGA
CAGACCCCTTTGATCCCCATGACCCCATTCTAAAGTTCAAGAATGTTTTA
ATCAACCTCAAGGTTGGAAGTGTTACCAAACATTCTTACAAATCAAGGGG
CTAAGGTTGGTTGGCCAACGTTGCCCCTCAACTTTCAGGCGGGGGACTCC
TTTGAAAAGGAACTAAAATTTGGGGAATTGAATCCACCCTTCAAAGGAAC
TCTGTTTCCATCCGGCCCAAACCTTAATAAGGCCTGGCTTTCCCTTTTTT
AACAAATCTTTTTCCCGGGGCATTTTTTGAAAAAAAAACCCCCCATTTTT
GTCTGGTTTTTTTAAAAATTTGGAAACCATATTTAACACCAACAAAAATA
TTCTCTTTAATACAACCCTCTCCTATATTGTTTTTTGTTTTTT
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