DY258104

Overview
NameDY258104
Unique NameDY258104
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1382
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1047 contig Ccv1_Contig1047:1..1382. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_BACSU (Putative propionyl-CoA carboxylase beta chain OS=Bacillus subtilis GN=yqjD PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 1.975e-17
Identity = 32/89 (35.96%), Postives = 47/89 (52.81%), Query Frame = 2
Query:  671 GEFFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNE 937
            G  FY   + S   IPQI+++LG C  G  Y PA+ D   M +  G +F+ GP +++  TGE+     LGGA +H   SG + +    E
Sbjct:  141 GHIFYRNVLYSGV-IPQISVILGPCAGGAVYSPALTDFIFMAEQTGRMFITGPKVIEKVTGEQVDAESLGGAGIHNAVSGNAHFSGHTE 228          

HSP 2 Score: 45.0542 bits (105), Expect = 1.975e-17
Identity = 38/122 (31.15%), Postives = 55/122 (45.08%), Query Frame = 1
Query:  322 RKQVTSFSPRESIDRLTDPGSSSLELSQLAGHELY--EVTLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIF 681
            ++Q    + RE I  L D   S +EL      ++   E  +   G++TG G + GR     A D TV GG       +K     ++AA+ K P I L DSGGA +    E     + +G IF
Sbjct:   27 QRQKGKLTARERIIFLLDQ-DSFIELHPFMESQVLTREQRMLGDGVVTGYGTIDGRSVYVFAQDFTVYGGALGETHARKICALMDLAAKNKAPIIGLNDSGGARI---QEGVLSLDGYGHIF 144          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_RAT (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Rattus norvegicus GN=Pccb PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.564e-17
Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 2
Query:  713 IPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGL 949
            IPQI+L++G C  G  Y PA+ D + MVK    +F+ GP  VK+ T E+  +  LGGA  H   SGV+     N++  L
Sbjct:  192 IPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPEFVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDAL 270          

HSP 2 Score: 42.3578 bits (98), Expect = 2.564e-17
Identity = 33/106 (31.13%), Postives = 47/106 (44.34%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHELYEVTLQS-------GGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE 645
            RE I  L DPGS  LE      H   +  + +         ++TG G ++GRL    + D TV GG+      +K  +  + A     P I L DSGGA + +  E
Sbjct:   69 RERISLLLDPGSF-LESDMFVEHRCADFGMAAEKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVE 173          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCC5_MYCTU (Probable propionyl-CoA carboxylase beta chain 5 OS=Mycobacterium tuberculosis GN=accD5 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.332e-17
Identity = 32/85 (37.65%), Postives = 47/85 (55.29%), Query Frame = 2
Query:  683 YNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNE 937
            +   I+++  IPQI+L++G+   G  Y PA+ D  +MV     +F+ GP ++K  TGEE     LGGA  H   SG + Y A  E
Sbjct:  171 FRNNILASGVIPQISLIMGAAAGGHVYSPALTDFVIMVDQTSQMFITGPDVIKTVTGEEVTMEELGGAHTHMAKSGTAHYAASGE 255          

HSP 2 Score: 43.1282 bits (100), Expect = 3.332e-17
Identity = 33/97 (34.02%), Postives = 46/97 (47.42%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHE-----LYEVTLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGA 624
            RE I  L D   S +EL  LA H      L E      G++TG G + GR     + D TV GG+   +  +K ++ QE+A +   P I + D  GA
Sbjct:   60 RERIYALLDE-DSFVELDALAKHRSTNFNLGEKRPLGDGVVTGYGTIDGRDVCIFSQDATVFGGSLGEVYGEKIVKVQELAIKTGRPLIGINDGAGA 155          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_MOUSE (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Mus musculus GN=Pccb PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.333e-17
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 2
Query:  713 IPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGL 949
            IPQI+L++G C  G  Y PA+ D + MVK    +F+ GP +VK+ T E+  +  LGGA  H   SGV+     N++  L
Sbjct:  192 IPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPEVVKSVTNEDVTQEQLGGAKTHTTVSGVAHRAFDNDVDAL 270          

HSP 2 Score: 41.5874 bits (96), Expect = 3.333e-17
Identity = 32/106 (30.19%), Postives = 47/106 (44.34%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHELYEVTLQSG-------GIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE 645
            RE I  L DPGS  +E      H   +  + +         ++TG G ++GRL    + D TV GG+      +K  +  + A     P I L DSGGA + +  E
Sbjct:   69 RERISLLLDPGSF-MESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVE 173          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_HUMAN (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Homo sapiens GN=PCCB PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 3.333e-17
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  713 IPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGL 949
            IPQI+L++G C  G  Y PA+ D + MVK    +F+ GP +VK+ T E+  +  LGGA  H   SGV+    +N++  L
Sbjct:  190 IPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGAKTHTTMSGVAHRAFENDVDAL 268          

HSP 2 Score: 41.2022 bits (95), Expect = 3.333e-17
Identity = 32/106 (30.19%), Postives = 47/106 (44.34%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHELYEVTLQSG-------GIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE 645
            RE I  L DPGS  +E      H   +  + +         ++TG G ++GRL    + D TV GG+      +K  +  + A     P I L DSGGA + +  E
Sbjct:   67 RERISLLLDPGSF-VESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQAITVGAPVIGLNDSGGARIQEGVE 171          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_BOVIN (Propionyl-CoA carboxylase beta chain, mitochondrial OS=Bos taurus GN=PCCB PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.333e-17
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 2
Query:  713 IPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGL 949
            IPQI+L++G C  G  Y PA+ D + MVK    +F+ GP +VK+ T E+  +  LGGA  H   SGV+    +N++  L
Sbjct:  190 IPQISLIMGPCAGGAVYSPALTDFTFMVKDTSYLFITGPDVVKSVTNEDVTQEELGGARTHTTMSGVAHRAFENDVDAL 268          

HSP 2 Score: 41.2022 bits (95), Expect = 3.333e-17
Identity = 32/106 (30.19%), Postives = 47/106 (44.34%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHELYEVTLQSG-------GIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE 645
            RE I  L DPGS  +E      H   +  + +         ++TG G ++GRL    + D TV GG+      +K  +  + A     P I L DSGGA + +  E
Sbjct:   67 RERISLLLDPGSF-VESDMFVEHRCADFGMAADKNKFPGDSVVTGRGRINGRLVYVFSQDFTVFGGSLSGAHAQKICKIMDQALTVGAPVIGLNDSGGARIQEGVE 171          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: YNGE_BACSU (Uncharacterized carboxylase yngE OS=Bacillus subtilis GN=yngE PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.543e-14
Identity = 42/99 (42.42%), Postives = 55/99 (55.56%), Query Frame = 2
Query:  659 RKILGEFFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGLSL 955
            R+  G  FYNQ  +S   IPQI L+ G   AGGAYIPA  D  VMV GN +++L  P + +   GE+     +GGA +HC  SG  D  A+ E   + L
Sbjct:  137 RRGAGRIFYNQVKLSGR-IPQICLLFGPSAAGGAYIPAFCDIVVMVDGNASMYLGSPRMAEMVIGEKVSLEEMGGARMHCSISGCGDILAETEEEAIQL 234          

HSP 2 Score: 78.1814 bits (191), Expect = 1.307e-13
Identity = 49/130 (37.69%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHELYEVTLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIFL*SSHNVS*RHPSNCISTG 738
            RE +  L D     +EL      E     L + G++T IG + G+    +AND TVK G++   T++K +R QEIA +   P IYLVDS GA +  Q  VFP +   GRIF  +   +S R P  C+  G
Sbjct:   37 RERLSLLFD---DDIELEDAFFAECMSDGLPADGVVTAIGKIGGQTVCVMANDSTVKAGSWGAKTVEKIIRIQEIAEKLNCPLIYLVDSAGARITDQINVFPGRRGAGRIFY-NQVKLSGRIPQICLLFG 162          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: 12S_PROFR (Methylmalonyl-CoA carboxyltransferase 12S subunit OS=Propionibacterium freudenreichii subsp. shermanii PE=1 SV=3)

HSP 1 Score: 61.6178 bits (148), Expect = 2.326e-14
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = 2
Query:  671 GEFFYNQAIMSAEGIPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNE 937
            G+ F+    +S   +PQIA++ G C  G +Y PA+ D  +M K    +F+ GP ++K+ TGE+     LGGA  H   SG   + A+++
Sbjct:  156 GKMFFANVKLSGV-VPQIAIIAGPCAGGASYSPALTDFIIMTK-KAHMFITGPQVIKSVTGEDVTADELGGAEAHMAISGNIHFVAEDD 242          

HSP 2 Score: 39.2762 bits (90), Expect = 2.326e-14
Identity = 31/116 (26.72%), Postives = 50/116 (43.10%), Query Frame = 1
Query:  349 RESIDRLTDPGSSSLELSQLAGHE-----LYEVTLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAEVFPDKENFGRIF 681
            RE ++ L DP S   E+     H      + +  + + G++TG G + GR     + D TV GG+       K +   E A     P ++  DSGGA +    E       +G++F
Sbjct:   48 RERLNNLLDPHSFD-EVGAFRKHRTTLFGMDKAVVPADGVVTGRGTILGRPVHAASQDFTVMGGSAGETQSTKVVETMEQALLTGTPFLFFYDSGGARI---QEGIDSLSGYGKMF 159          
BLAST of DY258104 vs. ExPASy Swiss-Prot
Match: PCCB_RHOER (Propionyl-CoA carboxylase beta chain OS=Rhodococcus erythropolis GN=pccB PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.592e-12
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  689 QAIMSAEG-IPQIALVLGSCTAGGAYIPAMADESVMVKGNGTIFLAGPPLVKAATGEESLRRILGGAAVHCKTSGVSDYFAQNELHGLSLGKTL 967
            +A++ A G IPQI++VLG    G AY PA+ D  +M    G +F+ GP +V++ TGE+     LGG   H K SGV+   A +E   L   + L
Sbjct:  117 EAMVRASGLIPQISVVLGFAAGGAAYGPALTDVVIMAP-EGRVFVTGPDVVRSVTGEQVDMVSLGGPDTHTKKSGVAHIAAHDEADALHRARRL 209          

HSP 2 Score: 30.8018 bits (68), Expect = 2.592e-12
Identity = 27/107 (25.23%), Postives = 43/107 (40.19%), Query Frame = 1
Query:  331 VTSFSPRESIDRLTDPGSSSLELSQL--AGHELYEVTLQSGGIITGIGPVHGRLCMFVANDPTVKGGTYFPITIKKHLRAQEIAAQCKLPCIYLVDSGGAYLPKQAE 645
            +T  +P    +  TDP      L  L   G  +        G++   G + G   +   +D TV GG       K  ++A + A + + P + L  SGGA L +  E
Sbjct:    1 MTILAPVTKSESSTDPRDPLARLENLFDPGTTVPLHARDKSGVLAASGNIDGVRTIAYCSDATVMGGAMGVDGCKHLVKAIDTAIEEESPIVGLWHSGGARLAEGVE 107          
The following BLAST results are available for this feature:
BLAST of DY258104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PCCB_BACSU1.975e-1735.96Putative propionyl-CoA carboxylase beta chain OS=B... [more]
PCCB_RAT2.564e-1740.51Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCC5_MYCTU3.332e-1737.65Probable propionyl-CoA carboxylase beta chain 5 OS... [more]
PCCB_MOUSE3.333e-1740.51Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_HUMAN3.333e-1740.51Propionyl-CoA carboxylase beta chain, mitochondria... [more]
PCCB_BOVIN3.333e-1740.51Propionyl-CoA carboxylase beta chain, mitochondria... [more]
YNGE_BACSU1.543e-1442.42Uncharacterized carboxylase yngE OS=Bacillus subti... [more]
12S_PROFR2.326e-1434.83Methylmalonyl-CoA carboxyltransferase 12S subunit ... [more]
PCCB_RHOER2.592e-1239.36Propionyl-CoA carboxylase beta chain OS=Rhodococcu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258104 ID=DY258104; Name=DY258104; organism=Citrus clementina; type=EST; length=1382bp
TCACCGGCTGAATGCCGCATCTTTTGATGGTAATCGAGGATACCGGCTAT
TCCGGCCGAGGGCGATGAGTCGTACCAAATACGGGTTTACAATACTTCAG
GCCGCTTTCGTACTGGAGATAAGTCGGTTTTCAGTACCGAAGAGCAATTT
TCATATGGCAATGAGCCTCATATCCCGTCCCTCCTTCCTCTTCGCTCGCG
TCAGTAATCTGGAGGTATTTCGCAGTAACTTTCAGGTATTCGTAAGGGCT
AGCTTTTGTTATTCAATTTCACACTCAAAAAGTCTCCGGTAGTGGCGGTG
TAATCGGCTGTGAAGTGGTACAGGAAGCAGGTAACAAGCTTTTCGCCTCG
AGAAAGTATCGACCGCCTCACTGACCCCGGTTCTTCATCTCTTGAGCTTT
CTCAGCTTGCAGGACATGAATTATATGAAGTAACCTTACAATCTGGAGGG
ATAATCACTGGAATTGGCCCTGTACATGGACGGCTTTGTATGTTTGTGGC
TAATGACCCTACTGTCAAGGGAGGAACATATTTTCCCATCACCATTAAGA
AGCATCTTAGGGCACAAGAGATTGCTGCGCAATGCAAACTACCATGCATA
TATCTTGTGGATAGTGGAGGTGCTTACCTTCCCAAGCAGGCTGAAGTATT
CCCTGACAAGGAAAATTTTGGGAGAATTTTTTTATAATCAAGCCATAATG
TCAGCTGAAGGCATCCCTCAAATTGCATTAGTACTGGGTTCCTGCACTGC
TGGAGGTGCTTATATTCCTGCAATGGCTGATGAAAGTGTTATGGTAAAAG
GAAATGGTACCATTTTTCTGGCCGGACCCCCCCTTGTAAAGGCTGCTACC
GGAGAGGAATCTCTGCGGAGGATTTTGGGGGGTGCTGCTGTGCATTGTAA
GACATCAGGGGTTTCAGATTATTTTGCTCAAAATGAATTGCATGGACTTT
CTCTTGGAAAGACATTATCAAGAACTTGCACATGGCTGGGAGAACAGGAG
AGATAAATGGATTTCAAAATATAAACCCTGAGTATTAAAACCTTTATATG
ACCTAAAGGAGCCTTATTCTATTGCCCCCCCAGACCTCCACCAGTCCTTT
TAATTTCCAATCATTATTGCCTCCCTTTTTTGATTGGAAGTGAATTTTGA
TGAATTAAAAAAATTGAATGGCATAACCCCTTGGCATCCGTTTTTTCCTA
AATTCTTTTTCCCACCCCCCTGGAAAACCTTTGGAAACACAGAAAAAATT
ATTTTTCTAAAATCCTCCTCCCCAAAGAGGGGGCCCCTTTTATTTTTATC
TTTTTTTCCTCCACGGGAAAAAATATTTCTCTTTTGGTTTTTCTCTTCTC
TCTAAAAAATTTTTAATCTCTGAGGAAATTAT
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