DY258108

Overview
NameDY258108
Unique NameDY258108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1391
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1049 contig Ccv1_Contig1049:1..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP6A1_MUSDO (Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.586e-12
Identity = 27/105 (25.71%), Postives = 52/105 (49.52%), Query Frame = 1
Query:  826 KYILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLS-----PSYVHSPGFYWEP 1125
            KY+LP    + IP+L IH+DP+++         P  F+  ++K    +   L F  GPR C+G+ F   ++++ L ++++ +R  +      P  ++     W P
Sbjct:  392 KYVLPKGTLVFIPVLGIHYDPELYPNPEEF--DPERFSPEMVK-QRDSVDWLGFGDGPRNCIGMRFGKMQSRLGLALVIRHFRFTVCSRTDIPMQINPESLAWTP 493          

HSP 2 Score: 42.3578 bits (98), Expect = 2.586e-12
Identity = 28/106 (26.42%), Postives = 49/106 (46.23%), Query Frame = 3
Query:  486 NDYFGLLLKAYHDPDMTKRI---SLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ---QNPTPDGIGKLKTMSMVINESLRLYPPAV 785
            ND+  L+L   ++P+   ++   + + L  +   F++ G E                   Q++LREEV E+F Q    N + D +  +  +  V+NE+LR YP  V
Sbjct:  268 NDFLDLVLDLKNNPESISKLGGLTFNELAAQVFVFFLGGFETSSSTMGFALYELAQNQQLQDRLREEVNEVFDQFKEDNISYDALMNIPYLDQVLNETLRKYPVGV 373          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AE_MOUSE (Cytochrome P450 4A14 OS=Mus musculus GN=Cyp4a14 PE=2 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 2.586e-12
Identity = 32/110 (29.09%), Postives = 52/110 (47.27%), Query Frame = 3
Query:  489 DYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            D+  +LL A  +      +S + L  E  TF   GH+                 + Q++ REEV  + G   + T D +G++   +M I E+LRLYPP +++SR +   V
Sbjct:  287 DFLDILLFARMED--RNSLSDEDLRAEVDTFMFEGHDTTASGISWIFYALATHPEHQQRCREEVQSILGDGTSVTWDHLGQMPYTTMCIKEALRLYPPVISVSRELSSPV 394          

HSP 2 Score: 46.595 bits (109), Expect = 2.586e-12
Identity = 26/91 (28.57%), Postives = 43/91 (47.25%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            +P  +   I I  +HH+P+ W    +    P  FA      + H+ + L F  G R C+G  FA  E K+A+ + L R+ +   P+ +  P
Sbjct:  402 IPKGITATISIYGLHHNPRFWPNPKVF--DPSRFAPDS---SHHSHAYLPFSGGSRNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVP 487          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AL_PIG (Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus scrofa GN=CYP4A21 PE=1 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 2.587e-12
Identity = 29/91 (31.87%), Postives = 44/91 (48.35%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP  + L + I  +HH+PQ+W         P  FA G    A H+ + + F  G R C+G  FA  E K+ + + L R+ +   PS +  P
Sbjct:  399 LPAGIILSLSIYGLHHNPQVWPNPEEF--DPSRFAPG---SARHSHAFMPFSGGSRNCIGKQFAMNEMKVVVALTLLRFELAPDPSRIPVP 484          

HSP 2 Score: 42.3578 bits (98), Expect = 2.587e-12
Identity = 24/84 (28.57%), Postives = 39/84 (46.43%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF  AGH+                 + Q++ REE+  L G     T D + ++   +M I E+LRLYPP  ++ R + + +
Sbjct:  308 EVDTFMAAGHDSTASGISWVLYALASNPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPSVGRELSKPI 391          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AP_PIG (Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 3.359e-12
Identity = 28/86 (32.56%), Postives = 44/86 (51.16%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPS 1092
            LP  + L + + ++HH+PQ+W         P  FA G    A H+ + + F  G R C+G  FA  E K+A+ + L R+ +   PS
Sbjct:  399 LPAGIILSLSVYSLHHNPQVWPNPEEF--DPSRFAPGS---ARHSHAFMPFSGGSRNCIGKQFAMNEMKVAVALTLLRFELAPDPS 479          

HSP 2 Score: 41.9726 bits (97), Expect = 3.359e-12
Identity = 24/84 (28.57%), Postives = 38/84 (45.24%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q++ REE+  L G     T D + ++   +M I E+LRLYPP   +SR + + +
Sbjct:  308 EVDTFMFEGHDTTASGISWILYALASHPEHQQRCREEIQGLLGDGTSITWDHLDQMPYTTMCIKEALRLYPPVPGVSRELSKPI 391          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: THAS_RAT (Thromboxane-A synthase OS=Rattus norvegicus GN=Tbxas1 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.355e-12
Identity = 29/101 (28.71%), Postives = 49/101 (48.51%), Query Frame = 3
Query:  519 HDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGK---LKTMSMVINESLRLYPPAVNISRNVERE 812
            H     K +++D +  +   F IAGHE                 + QE+L +EV +LF +++P P+       L  + MV+ E+LR+YPPA   +R   ++
Sbjct:  318 HPTSTAKPLTVDEIAGQAFLFLIAGHEITTNTLSFITYLLATHPECQERLLKEV-DLFMEKHPAPEYCNLQEGLPYLDMVVAETLRMYPPAFRFTREAAQD 417          

HSP 2 Score: 45.4394 bits (106), Expect = 4.355e-12
Identity = 28/85 (32.94%), Postives = 40/85 (47.06%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSP 1089
            +P    L I + A+HHDP+ W      F   R  AE  L+    T   L F +GPR C+G+       K+ LL +L ++R    P
Sbjct:  425 IPAGSVLEIAVGALHHDPEHWPNPET-FDPERFTAEARLQQKPFT--YLPFGAGPRSCLGVRLGLLVVKLTLLQVLHKFRFEACP 506          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4FC_HUMAN (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 4.357e-12
Identity = 30/98 (30.61%), Postives = 49/98 (50.00%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K +S + +  E  TF   GH+                 ++QE+ R+EV EL   ++P     D + +L  ++M + ESLRL+PPA  ISR   +++ L
Sbjct:  311 KALSDEDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVL 408          

HSP 2 Score: 44.2838 bits (103), Expect = 4.357e-12
Identity = 24/83 (28.92%), Postives = 43/83 (51.81%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLI--FSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYR 1074
            ++P  +  +I I+ +HH+P +W    +   F    + ++G   LA      + F +GPR C+G  FA  E K+ L ++L  +R
Sbjct:  413 VIPKGITCLIDIIGVHHNPTVWPDPEVYDPFRFDPENSKGRSPLA-----FIPFSAGPRNCIGQAFAMAEMKVVLALMLLHFR 490          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4FE_MOUSE (Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus GN=Cyp4f14 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 4.357e-12
Identity = 30/98 (30.61%), Postives = 47/98 (47.96%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K +S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M I ESLRL+PP   ISR   +++ L
Sbjct:  311 KELSDEDIRAEADTFMFEGHDTTASGLSWILYNLARHPEYQERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILL 408          

HSP 2 Score: 45.4394 bits (106), Expect = 4.357e-12
Identity = 27/81 (33.33%), Postives = 44/81 (54.32%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            +P  +  +I I  IHH+P +W    +    P  F    +K ++  + I  F +GPR C+G  FA +E K+AL + L R+R+
Sbjct:  414 IPKGIICLISIFGIHHNPSVWPDPEVY--DPFRFDPENIKDSSPLAFI-PFSAGPRNCIGQTFAMSEMKVALALTLLRFRL 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 4.361e-12
Identity = 35/119 (29.41%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  489 DYFGLLLKAYH---DPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLE-LFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEVH 833
            D+  L++ A++   D D  K +S   +  +   F  AG+E                 D Q+KL+EE+ E L  +  PT D + +++ + MV+NE+LRLYP    + R  +++V L  V+
Sbjct:  270 DFLQLMMNAHNNSKDKDSHKALSDMEITAQSIVFIFAGYETTSSTLSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVY 388          

HSP 2 Score: 42.743 bits (99), Expect = 4.361e-12
Identity = 28/83 (33.73%), Postives = 41/83 (49.40%), Query Frame = 1
Query:  823 GKYILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            G YI P    ++IP  A+HHDPQ W         P  F++   K +      + F  GPR C+G+ FA    K+AL  ++Q +
Sbjct:  386 GVYI-PKGSTVMIPSYALHHDPQHWPEPEEF--QPERFSKEN-KGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNF 464          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: C13B1_CAEEL (Putative cytochrome P450 cyp-13B1 OS=Caenorhabditis elegans GN=cyp-13B1 PE=2 SV=2)

HSP 1 Score: 46.9802 bits (110), Expect = 5.656e-12
Identity = 32/125 (25.60%), Postives = 56/125 (44.80%), Query Frame = 3
Query:  486 NDYFGLLLKAYHDP--------DMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGKLKTMSMVINESLRLYPPA-VNISRNVEREVRLGEVH 833
            ND+  + L  Y +          + K+++ + +I  C  F +AG +                 +  +  +EEV  + G +N + D + KLK +  V+ ESLRLYP A    SR   +   LG+++
Sbjct:  278 NDFIDMFLNYYSEQVEDIEFGSTVEKKVTAEDVIGACFVFLLAGFDTTANSLAYASYLLAKHPEKMKLAQEEVDTVVGSENVSYDDMTKLKYLDAVVRESLRLYPVAWFACSRECVKPTTLGDIY 402          

HSP 2 Score: 45.8246 bits (107), Expect = 5.656e-12
Identity = 25/83 (30.12%), Postives = 41/83 (49.40%), Query Frame = 1
Query:  823 GKYILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            G   +   +++   ++++H   +IWG     F   R         + HT S + F +GPR CVG+    +EAK AL  +L+RY
Sbjct:  399 GDIYIDKGVKIEADVMSLHRSKEIWGENADDFVPERWLEPS----SRHTMSWIPFGAGPRQCVGMRLGLSEAKTALAHLLRRY 477          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 5.658e-12
Identity = 30/98 (30.61%), Postives = 49/98 (50.00%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K++S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D +  L  ++M + ESLRL+PP   ISR+V +++ L
Sbjct:  311 KKLSDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVL 408          

HSP 2 Score: 43.1282 bits (100), Expect = 5.658e-12
Identity = 23/82 (28.05%), Postives = 42/82 (51.22%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P  +  +I +   HH+P +W     ++   R   E + + +    + + F +GPR C+G  FA  E K+ L + L R+RV
Sbjct:  413 VIPKGIICLISVFGTHHNPAVWPDPE-VYDPFRFDPENIKERSP--LAFIPFSAGPRNCIGQTFAMAEMKVVLALTLLRFRV 491          
The following BLAST results are available for this feature:
BLAST of DY258108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CP6A1_MUSDO2.586e-1225.71Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 P... [more]
CP4AE_MOUSE2.586e-1229.09Cytochrome P450 4A14 OS=Mus musculus GN=Cyp4a14 PE... [more]
CP4AL_PIG2.587e-1231.87Taurochenodeoxycholic 6 alpha-hydroxylase OS=Sus s... [more]
CP4AP_PIG3.359e-1232.56Cytochrome P450 4A25 OS=Sus scrofa GN=CYP4A25 PE=2... [more]
THAS_RAT4.355e-1228.71Thromboxane-A synthase OS=Rattus norvegicus GN=Tbx... [more]
CP4FC_HUMAN4.357e-1230.61Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]
CP4FE_MOUSE4.357e-1230.61Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus... [more]
CP341_MOUSE4.361e-1229.41Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
C13B1_CAEEL5.656e-1225.60Putative cytochrome P450 cyp-13B1 OS=Caenorhabditi... [more]
CP4F2_HUMAN5.658e-1230.61Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258108 ID=DY258108; Name=DY258108; organism=Citrus clementina; type=EST; length=1391bp
CACTCTCGTTAACCCGCTATTTGTGTTTGGTACCCGGGTATTCGGCCATT
CCGGCCGGGTGTCAACGAAAACTTCGCCCCCCTCGCTTTTTCATGCATAA
AGCTTTCATGTTATCGATTCCTATCGAAGGTTCGCAAGAGCGGGTGTTTC
TTGTTAAAAAGTTCGGTGTAACAACGAGGGCAAGGGTGTACCGTGGTCTG
TCCAAGTTCTTCACGTTTCTAACATTCGGTAATTTTTTCCCAGTGACAGT
TTTTCGGTAGCAGTTATTCGGTAGAGGGTAAGCATATTCAATAAGCTTTC
CAATATGTCTCTCATCGCCTCCAGAAATGCCTATAAGTTTAAAATCTCTC
TTATTGGAGTTTTTGTGAAAACATCTGATGATGTTGAAGCGGACAAACTC
GAACAGGGGATTCGAGTTTCAATCATAAAAATGATGAAGTACACGAGAAG
TGAAGGCGATGAAGGGAGAATCAGTAGGATATGGAAATGATTATTTTGGA
TTGCTCCTGAAGGCTTATCACGATCCTGATATGACCAAGAGAATCTCTCT
TGATGTACTAATTGATGAGTGCAAGACATTCTATATTGCAGGACATGAAA
CAACCACAAAATTACTTACCTGGACAATTTTACTTCTAGCAACGCACACA
GATTGGCAAGAGAAATTAAGAGAGGAAGTGCTTGAATTATTTGGCCAGCA
AAATCCGACACCAGATGGCATAGGAAAATTGAAAACAATGAGCATGGTTA
TAAATGAATCTTTAAGGCTGTATCCGCCAGCTGTTAACATTTCGAGGAAT
GTTGAAAGGGAAGTGAGACTGGGGGAAGTACATTCTTCCAGNCAATATGG
AACTTGTTATTCCAATTCTGGCAATTCACCATGACCCTCAAATTTGGGGG
AGAAAGATGTTGATATTTTCAAGCCCGAGAGATTTTGCAGAAGGTGTGCT
AAAGCTAGCAACACACACCAGCAGCATTCTTTCTTTTTAGTCAGGGCCAA
GAATTTGTGTGGGGCTTGATTTTGCAGCTACAGAAGCAAAGATTGCGCTT
CTCATGATTCTGCAACGATACAGGGTCAATCTGTCCCCCAGTTATGTGCA
CTCCCCGGGTTTTTATTGGGAACCCTTCCCCCCTCACCTGGGACTTCCAG
TTATATTTCCCCCCCTTTAATGGCTCACCCAAAAAAACTAGCTAAAGAAA
CTTTTCTCCTTTTTATAACCCCTCCCCGGGGGTTTGCGGGAATCCCCACC
CCCCTTTTTTTTTATAAAAAAAAAAAAATTTTTTTTCGTTTTTTTTTTTT
TTTTTTTTTTAAAAACCCCCCCTCTCCCGTGGGGGGCACGTGGAGGAGAC
AAACAAAAACCCACCCTATTTTCTTTGTTCCCCCTCAACAA
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