DY258108

Overview
NameDY258108
Unique NameDY258108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1391
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AA_MOUSE (Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE=2 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 5.662e-12
Identity = 27/91 (29.67%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP  +++ + I  +HH+P++W    +    P  FA    +   H+ S L F  G R C+G  FA +E K+ + + L R+ +   P+ V  P
Sbjct:  404 LPKGVQVTLSIYGLHHNPKVWPNPEVF--DPSRFAPDSPR---HSHSFLPFSGGARNCIGKQFAMSELKVIVALTLLRFELLPDPTRVPMP 489          

HSP 2 Score: 42.743 bits (99), Expect = 5.662e-12
Identity = 27/84 (32.14%), Postives = 37/84 (44.05%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 D Q++ REEV  L G  +  T D + ++   +M I E+LRLYPP   I R +   V
Sbjct:  313 EVDTFMFEGHDTTASGVSWIFYALATHPDHQQRCREEVQSLLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSV 396          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.663e-12
Identity = 31/87 (35.63%), Postives = 41/87 (47.13%), Query Frame = 1
Query:  823 GKYILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSS----ILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            G YI P    ++IP  A+HHDPQ W       S P +F           S      L F +GPR C+G+ FA    K+AL  I+Q +
Sbjct:  386 GVYI-PKGSTVMIPSYALHHDPQHW-------SEPEEFQPERFSKENKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNF 464          

HSP 2 Score: 45.8246 bits (107), Expect = 5.663e-12
Identity = 33/119 (27.73%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  489 DYFGLLLKAYH---DPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLE-LFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEVH 833
            D+  L++ +++   D    K +S   +  +   F  AG+E                 D Q+KL++E+ E L  +  PT D + +++ + MV+NE+LRLYP A  + R  +++V L  V+
Sbjct:  270 DFLQLMMNSHNNSKDKVSHKALSDMEITAQSIIFIFAGYETTSSTLSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVY 388          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 5.664e-12
Identity = 27/84 (32.14%), Postives = 42/84 (50.00%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSI-----LSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P    +VIP  A+HHDP+ W       + P +F     + +    SI       F +GPR C+G+ FA    K+AL+ +LQ +
Sbjct:  388 IPKGSMVVIPTYALHHDPKYW-------TEPEEFRPE--RFSKKKDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNF 462          

HSP 2 Score: 45.8246 bits (107), Expect = 5.664e-12
Identity = 25/85 (29.41%), Postives = 45/85 (52.94%), Query Frame = 3
Query:  579 FYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEV-LELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEV 830
            F  AG+E                 D Q+KL++E+   L  +  PT D + +++ + MV+NE+LRL+P A+ + R  +++V +  V
Sbjct:  302 FIFAGYETTSSVLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGV 386          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F6_RAT (Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6 PE=2 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 7.338e-12
Identity = 28/88 (31.82%), Postives = 43/88 (48.86%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M I ESLRL+PP + ISR   +++ L
Sbjct:  321 EADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVLLISRCCSQDIVL 408          

HSP 2 Score: 44.2838 bits (103), Expect = 7.338e-12
Identity = 26/82 (31.71%), Postives = 43/82 (52.44%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P     VI I  +HH+P +W     +++  R   E   K +    + + F +GPR C+G  FA +E K+AL + L R+ V
Sbjct:  413 VIPKGNICVISIFGVHHNPSVWPDPE-VYNPFRFDPENPQKRSP--LAFIPFSAGPRNCIGQTFAMSEIKVALALTLLRFCV 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4A6_RABIT (Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CYP4A6 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.349e-12
Identity = 30/88 (34.09%), Postives = 46/88 (52.27%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYV 1098
            LP  + + + I A+HH+P++W    +    P  FA G    A H+ + L F  GPR C+G  FA  E K+A+ + L R+ +   P  V
Sbjct:  405 LPKGVIVTLSIYALHHNPKVWPNPEVF--DPFPFAPGS---ARHSHAFLPFSGGPRNCIGKQFAMNELKVAVALTLVRFELLPDPKRV 487          

HSP 2 Score: 37.3502 bits (85), Expect = 7.349e-12
Identity = 23/84 (27.38%), Postives = 36/84 (42.86%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q + REE+  L G   + T + + ++   +M I E+LRLYPP   + R +   V
Sbjct:  314 EVDTFMFEGHDTTASGISWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPGVGRQLSSPV 397          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.238e-11
Identity = 28/98 (28.57%), Postives = 46/98 (46.94%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K +S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M + ESLRL+PP    +R   ++V L
Sbjct:  311 KELSDEDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCLKESLRLHPPIPTFARGCTQDVVL 408          

HSP 2 Score: 45.0542 bits (105), Expect = 1.238e-11
Identity = 26/82 (31.71%), Postives = 41/82 (50.00%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P      I I AIHH+P +W     ++   R   E   K +    + + F +GPR C+G  FA  E K+ L + L R+R+
Sbjct:  413 VIPKGNVCNINIFAIHHNPSVWPDPE-VYDPFRFDPENAQKRSP--MAFIPFSAGPRNCIGQKFAMAEMKVVLALTLLRFRI 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 46.2098 bits (108), Expect = 2.088e-11
Identity = 28/79 (35.44%), Postives = 39/79 (49.37%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P    + IP  A+HHDPQ W  K   F   R   E    +  +    L F +GPR C+G+ FA    K+AL  +LQ +
Sbjct:  389 IPKGSVVTIPTYALHHDPQHWP-KPEEFHPERFSKENKGSIDPYV--YLPFGNGPRNCIGMRFALMNMKLALTKVLQNF 464          

HSP 2 Score: 44.669 bits (104), Expect = 2.088e-11
Identity = 33/115 (28.70%), Postives = 57/115 (49.57%), Query Frame = 3
Query:  489 DYFGLLLKAYH---DPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVL-ELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            D+  L+L A++   D    K +S   +I +   F  AG+E                 D Q+KL+EE+   L  +  PT D + +++ + MV+NE+LRLYP    + R  ++++ L
Sbjct:  270 DFLQLMLNAHNNSKDEVSHKALSDVEIIAQSVIFIFAGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIEL 384          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3AV_MESAU (Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CYP3A31 PE=2 SV=1)

HSP 1 Score: 45.4394 bits (106), Expect = 2.089e-11
Identity = 30/116 (25.86%), Postives = 59/116 (50.86%), Query Frame = 3
Query:  489 DYFGLLLKAY-HDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEV-LELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEV 830
            D+  L++ ++ +  D  K +S   +I +   F  AG++                 D Q+KL+EE+ + L  +  P+ D + +++ + MV+NE+LRLYP    + R  +++V +  V
Sbjct:  269 DFLQLMMNSHDNSKDSHKALSDMEIIAQSIIFIFAGYDTTSSTLSFALYLLATHPDVQKKLQEEIDIALPNKARPSYDKVMEMEYLDMVLNETLRLYPIGSRLERVCKQDVEMDGV 384          

HSP 2 Score: 45.4394 bits (106), Expect = 2.089e-11
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P    +++P+ A+H+DPQ W         P  F++   K +      L F +GPR C+G+ FA    K+AL  +LQ +
Sbjct:  386 VPKGSIVMVPVFALHYDPQYWPEPEKF--RPERFSKEN-KGSIDPYIFLPFGNGPRNCIGMRFALMNMKLALTKVLQNF 461          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AB_HUMAN (Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE=1 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.563e-11
Identity = 28/91 (30.77%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP  + +++ I  +HH+P++W    +    P  FA G    A H+ + L F  G R C+G  FA  E K+A  + L R+ +   P+ +  P
Sbjct:  405 LPKGIMVLLSIYGLHHNPKVWPNPEVF--DPFRFAPGS---AQHSHAFLPFSGGSRNCIGKQFAMNELKVATALTLLRFELLPDPTRIPIP 490          

HSP 2 Score: 38.5058 bits (88), Expect = 4.563e-11
Identity = 25/84 (29.76%), Postives = 36/84 (42.86%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                   QE+ REE+  L G   + T + + ++   +M I E+LRLYPP   I R +   V
Sbjct:  314 EVDTFMFEGHDTTASGISWILYALATHPKHQERCREEIHSLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPV 397          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AA_RAT (Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a10 PE=1 SV=2)

HSP 1 Score: 49.6766 bits (117), Expect = 4.566e-11
Identity = 27/91 (29.67%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP  +++ + I  +HH+P++W    +    P  FA    +   H+ S L F  G R C+G  FA +E K+ + + L R+ +   P+ V  P
Sbjct:  404 LPKGIQVTLSIYGLHHNPKVWPNPEVF--DPSRFAPDSPR---HSHSFLPFSGGARNCIGKQFAMSEMKVIVALTLLRFELLPDPTKVPIP 489          

HSP 2 Score: 40.0466 bits (92), Expect = 4.566e-11
Identity = 25/84 (29.76%), Postives = 37/84 (44.05%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q++ REEV  + G  +  T D + ++   +M I E+LRLYPP   I R +   V
Sbjct:  313 EVDTFMFEGHDTTASGVSWIFYALATHPEHQQRCREEVQSVLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSV 396          
The following BLAST results are available for this feature:
BLAST of DY258108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CP4AA_MOUSE5.662e-1229.67Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE... [more]
CP3AB_MOUSE5.663e-1235.63Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3A5_HUMAN5.664e-1232.14Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP4F6_RAT7.338e-1231.82Cytochrome P450 4F6 OS=Rattus norvegicus GN=Cyp4f6... [more]
CP4A6_RABIT7.349e-1234.09Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP4F8_HUMAN1.238e-1128.57Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
CP3A2_RAT2.088e-1135.44Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP3AV_MESAU2.089e-1125.86Cytochrome P450 3A31 OS=Mesocricetus auratus GN=CY... [more]
CP4AB_HUMAN4.563e-1130.77Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE... [more]
CP4AA_RAT4.566e-1129.67Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258108 ID=DY258108; Name=DY258108; organism=Citrus clementina; type=EST; length=1391bp
CACTCTCGTTAACCCGCTATTTGTGTTTGGTACCCGGGTATTCGGCCATT
CCGGCCGGGTGTCAACGAAAACTTCGCCCCCCTCGCTTTTTCATGCATAA
AGCTTTCATGTTATCGATTCCTATCGAAGGTTCGCAAGAGCGGGTGTTTC
TTGTTAAAAAGTTCGGTGTAACAACGAGGGCAAGGGTGTACCGTGGTCTG
TCCAAGTTCTTCACGTTTCTAACATTCGGTAATTTTTTCCCAGTGACAGT
TTTTCGGTAGCAGTTATTCGGTAGAGGGTAAGCATATTCAATAAGCTTTC
CAATATGTCTCTCATCGCCTCCAGAAATGCCTATAAGTTTAAAATCTCTC
TTATTGGAGTTTTTGTGAAAACATCTGATGATGTTGAAGCGGACAAACTC
GAACAGGGGATTCGAGTTTCAATCATAAAAATGATGAAGTACACGAGAAG
TGAAGGCGATGAAGGGAGAATCAGTAGGATATGGAAATGATTATTTTGGA
TTGCTCCTGAAGGCTTATCACGATCCTGATATGACCAAGAGAATCTCTCT
TGATGTACTAATTGATGAGTGCAAGACATTCTATATTGCAGGACATGAAA
CAACCACAAAATTACTTACCTGGACAATTTTACTTCTAGCAACGCACACA
GATTGGCAAGAGAAATTAAGAGAGGAAGTGCTTGAATTATTTGGCCAGCA
AAATCCGACACCAGATGGCATAGGAAAATTGAAAACAATGAGCATGGTTA
TAAATGAATCTTTAAGGCTGTATCCGCCAGCTGTTAACATTTCGAGGAAT
GTTGAAAGGGAAGTGAGACTGGGGGAAGTACATTCTTCCAGNCAATATGG
AACTTGTTATTCCAATTCTGGCAATTCACCATGACCCTCAAATTTGGGGG
AGAAAGATGTTGATATTTTCAAGCCCGAGAGATTTTGCAGAAGGTGTGCT
AAAGCTAGCAACACACACCAGCAGCATTCTTTCTTTTTAGTCAGGGCCAA
GAATTTGTGTGGGGCTTGATTTTGCAGCTACAGAAGCAAAGATTGCGCTT
CTCATGATTCTGCAACGATACAGGGTCAATCTGTCCCCCAGTTATGTGCA
CTCCCCGGGTTTTTATTGGGAACCCTTCCCCCCTCACCTGGGACTTCCAG
TTATATTTCCCCCCCTTTAATGGCTCACCCAAAAAAACTAGCTAAAGAAA
CTTTTCTCCTTTTTATAACCCCTCCCCGGGGGTTTGCGGGAATCCCCACC
CCCCTTTTTTTTTATAAAAAAAAAAAAATTTTTTTTCGTTTTTTTTTTTT
TTTTTTTTTTAAAAACCCCCCCTCTCCCGTGGGGGGCACGTGGAGGAGAC
AAACAAAAACCCACCCTATTTTCTTTGTTCCCCCTCAACAA
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