DY258108

Overview
NameDY258108
Unique NameDY258108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1391
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1049 contig Ccv1_Contig1049:1..1391. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4AE_RAT (Cytochrome P450 4A14 OS=Rattus norvegicus GN=Cyp4a14 PE=1 SV=2)

HSP 1 Score: 45.8246 bits (107), Expect = 4.566e-11
Identity = 33/110 (30.00%), Postives = 51/110 (46.36%), Query Frame = 3
Query:  489 DYFGLLLKAYHDPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            D+  +LL A  +    K +S + L  E  TF   GH+                 + QE+ REEV  + G   + T D + ++   +M I E+LRLYPP  ++SR +   V
Sbjct:  287 DFLDILLFAKMEDG--KSLSDEDLRAEVDTFMFEGHDTTASGISWVFYALATHPEHQERCREEVQSILGDGTSVTWDHLDQIPYTTMCIKEALRLYPPVPSVSRELSSPV 394          

HSP 2 Score: 43.8986 bits (102), Expect = 4.566e-11
Identity = 25/91 (27.47%), Postives = 42/91 (46.15%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            +P  +   I I  +HH+P  W    +    P  F+    +   H+ + L F  G R C+G  FA  E K+A+ + L R+ +   P+ +  P
Sbjct:  402 IPKGITTTILIYGLHHNPSYWPNPKVF--DPSRFSPDSPR---HSHAYLPFSGGARNCIGKQFAMNELKVAVALTLLRFELLPDPTRIPVP 487          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4F3_HUMAN (Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapiens GN=CYP4F3 PE=2 SV=2)

HSP 1 Score: 48.1358 bits (113), Expect = 5.922e-11
Identity = 29/98 (29.59%), Postives = 48/98 (48.98%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTP---DGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            K++S + +  E  TF   GH+                 ++QE+ R+EV EL   + P     D + +L  ++M I ESLRL+PP   +SR   +++ L
Sbjct:  311 KKLSDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCIKESLRLHPPVPAVSRCCTQDIVL 408          

HSP 2 Score: 41.2022 bits (95), Expect = 5.922e-11
Identity = 25/82 (30.49%), Postives = 41/82 (50.00%), Query Frame = 1
Query:  832 ILPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRV 1077
            ++P  +  +I +   HH+P +W    +    P  F    +K  +  + I  F +GPR C+G  FA  E K+ L + L R+RV
Sbjct:  413 VIPKGIICLISVFGTHHNPAVWPDPEVY--DPFRFDPKNIKERSPLAFI-PFSAGPRNCIGQAFAMAEMKVVLGLTLLRFRV 491          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4A7_RABIT (Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CYP4A7 PE=1 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.926e-11
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP  + + + I  +HH+P++W    +    P  FA G    A H+ + L F  G R C+G  FA  E K+A+ + L R+ +   P+ V  P
Sbjct:  406 LPKGIIITLSIYGLHHNPKVWPNPEVF--DPSRFAPGS---ARHSHAFLPFSGGSRNCIGKQFAMNELKVAVALTLVRFELLPDPTRVPIP 491          

HSP 2 Score: 36.5798 bits (83), Expect = 5.926e-11
Identity = 23/84 (27.38%), Postives = 35/84 (41.67%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q + REE+  L G   + T + + K+   +M I E+LRLYPP   +   +   V
Sbjct:  315 EVDTFMFEGHDTTASGISWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDKMPYTTMCIKEALRLYPPVPGVGSKLSSPV 398          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 45.0542 bits (105), Expect = 5.929e-11
Identity = 35/134 (26.12%), Postives = 68/134 (50.75%), Query Frame = 3
Query:  441 TREVKAMKG----ESVGYGNDYFGLLLKAYH--DPDMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEV-LELFGQQNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRL 821
            T+ VK +K     E+  +  D+  L++ + +  D +  K +S   L+ +   F  AG+E                 D Q+K+++E+   L  +  PT D + +L+ + MV+NE+LRL+P A+ + R  +++V +
Sbjct:  250 TKSVKQIKEGRLKETQKHRVDFLQLMIDSQNSKDSETHKALSDLELMAQSIIFIFAGYETTSSVLSFIIYELATHPDVQQKVQKEIDTVLPNKAPPTYDTVLQLEYLDMVVNETLRLFPVAMRLERVCKKDVEI 383          

HSP 2 Score: 44.2838 bits (103), Expect = 5.929e-11
Identity = 25/79 (31.65%), Postives = 42/79 (53.16%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P  + ++IP   +HHDP+ W R+   F   R   +    +  +  +   F SGPR C+G+ FA    K+AL+ +LQ +
Sbjct:  388 IPKGVVVMIPSYVLHHDPKYW-REPEKFLPERFSKKNKDNIDPYIYT--PFGSGPRNCIGMRFALVNMKLALVRVLQNF 463          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: THAS_BOVIN (Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 7.681e-11
Identity = 31/97 (31.96%), Postives = 49/97 (50.52%), Query Frame = 3
Query:  519 HDP-DMTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGK---LKTMSMVINESLRLYPPAVNISR 797
            H P  ++K +S+D ++ +   F IAG+E                 + QEKL EEV + F +++  P+       L  + MVI E+LR+YPPA   +R
Sbjct:  317 HSPRPLSKPLSVDEVVGQAFIFLIAGYEIVTNTLSFATYLLATNPECQEKLLEEV-DCFSKEHLAPEYCSLQEGLPYLDMVIKETLRMYPPAFRFTR 412          

HSP 2 Score: 42.743 bits (99), Expect = 7.681e-11
Identity = 27/85 (31.76%), Postives = 42/85 (49.41%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSP 1089
            +P    L   + A+H+DP+ W      F+  R  AE   +   +T   L F +GPR C+G+     E K+ LL IL+++R    P
Sbjct:  425 IPAGAVLETAVGALHYDPEHWPNPEN-FNPERFTAEAQQRRRPYT--YLPFGAGPRSCLGVRLGLLELKLTLLHILRKFRFEACP 506          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: THAS_HUMAN (Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 PE=1 SV=3)

HSP 1 Score: 45.4394 bits (106), Expect = 7.681e-11
Identity = 30/102 (29.41%), Postives = 50/102 (49.02%), Query Frame = 3
Query:  519 HDPD-MTKRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGK---LKTMSMVINESLRLYPPAVNISRNVERE 812
            H P  M + +++D ++ +   F IAG+E                 D QEKL  EV ++F +++  P+       L  + MVI E+LR+YPPA   +R   ++
Sbjct:  317 HQPSPMARPLTVDEIVGQAFIFLIAGYEIITNTLSFATYLLATNPDCQEKLLREV-DVFKEKHMAPEFCSLEEGLPYLDMVIAETLRMYPPAFRFTREAAQD 417          

HSP 2 Score: 43.5134 bits (101), Expect = 7.681e-11
Identity = 27/85 (31.76%), Postives = 41/85 (48.24%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSP 1089
            +P    L + + A+HHDP+ W      F+  R  AE   +    T   L F +GPR C+G+     E K+ LL +L ++R    P
Sbjct:  425 IPAGAVLEMAVGALHHDPEHWPSPET-FNPERFTAEARQQHRPFT--YLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKFRFQACP 506          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: C13A7_CAEEL (Putative cytochrome P450 CYP13A7 OS=Caenorhabditis elegans GN=cyp-13A7 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.688e-11
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = 1
Query:  871 AIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYV 1098
            ++HHDP++WG  +  F   R  +   L  A      L F  GPRIC+G+  A  E K+ L  IL+ Y    +P  V
Sbjct:  421 SLHHDPKVWGDDVNEFKPERWESGDELFFAK--GGYLPFGMGPRICIGMRLAMMEMKMLLTNILKNYTFETTPETV 494          

HSP 2 Score: 41.2022 bits (95), Expect = 7.688e-11
Identity = 25/82 (30.49%), Postives = 39/82 (47.56%), Query Frame = 3
Query:  537 KRISLDVLIDECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQQNPTPDGIGKLKTMSMVINESLRLYPPA 782
            K ++ D +I +   F +AG++                 + Q+KL+EEV         T D + KLK +  V+ E+LRLYP A
Sbjct:  309 KHLTFDEIIGQLFVFLLAGYDTTALSLSYSSYLLATHPEIQKKLQEEVDRECPDPEVTFDQLSKLKYLECVVKEALRLYPLA 390          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP4A5_RABIT (Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CYP4A5 PE=2 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 7.691e-11
Identity = 27/91 (29.67%), Postives = 43/91 (47.25%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTSSILSF*SGPRICVGLDFAATEAKIALLMILQRYRVNLSPSYVHSP 1107
            LP    + + I  +HH+P +W    +    P  F  G    A H+ + L F  G R C+G  FA  E K+A+ + L R+ +   P+ +  P
Sbjct:  406 LPKGFTVTLSIYGLHHNPNVWPNPEVF--DPGRFTPGS---ARHSHAFLPFSGGARNCIGKQFAMNELKVAVALTLVRFELLPDPTRIPKP 491          

HSP 2 Score: 38.1206 bits (87), Expect = 7.691e-11
Identity = 24/84 (28.57%), Postives = 38/84 (45.24%), Query Frame = 3
Query:  567 ECKTFYIAGHEXXXXXXXXXXXXXXXXXDWQEKLREEVLELFGQ-QNPTPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREV 815
            E  TF   GH+                 + Q + REE+  L G   + T + + ++   +M I E++RLYPP   ISR++   V
Sbjct:  315 EVDTFMFEGHDTTASGVSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEAMRLYPPVPAISRDLSSPV 398          
BLAST of DY258108 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 7.695e-11
Identity = 25/83 (30.12%), Postives = 41/83 (49.40%), Query Frame = 1
Query:  835 LPXNMELVIPILAIHHDPQIWGRKMLIFSSPRDFAEGVLKLATHTS----SILSF*SGPRICVGLDFAATEAKIALLMILQRY 1071
            +P  + +++PI A+HHDP+ W       + P  F           S      + F +GPR C+G+ FA T  K+A++  LQ +
Sbjct:  388 IPKGLAVMVPIYALHHDPKYW-------TEPEKFCPERFSKKNKDSIDLYRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNF 463          

HSP 2 Score: 40.0466 bits (92), Expect = 7.695e-11
Identity = 19/61 (31.15%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  651 DWQEKLREEVLELFGQQNP-TPDGIGKLKTMSMVINESLRLYPPAVNISRNVEREVRLGEV 830
            D Q+KL+EE+  +   + P T D + +++ + MV+NE+LRL+P    ++R  ++++ +  V
Sbjct:  326 DVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIEINGV 386          
The following BLAST results are available for this feature:
BLAST of DY258108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
CP4AE_RAT4.566e-1130.00Cytochrome P450 4A14 OS=Rattus norvegicus GN=Cyp4a... [more]
CP4F3_HUMAN5.922e-1129.59Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapie... [more]
CP4A7_RABIT5.926e-1131.87Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CY... [more]
CP3A7_HUMAN5.929e-1126.12Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
THAS_BOVIN7.681e-1131.96Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=... [more]
THAS_HUMAN7.681e-1129.41Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 P... [more]
C13A7_CAEEL7.688e-1135.53Putative cytochrome P450 CYP13A7 OS=Caenorhabditis... [more]
CP4A5_RABIT7.691e-1129.67Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CY... [more]
CP343_HUMAN7.695e-1130.12Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258108 ID=DY258108; Name=DY258108; organism=Citrus clementina; type=EST; length=1391bp
CACTCTCGTTAACCCGCTATTTGTGTTTGGTACCCGGGTATTCGGCCATT
CCGGCCGGGTGTCAACGAAAACTTCGCCCCCCTCGCTTTTTCATGCATAA
AGCTTTCATGTTATCGATTCCTATCGAAGGTTCGCAAGAGCGGGTGTTTC
TTGTTAAAAAGTTCGGTGTAACAACGAGGGCAAGGGTGTACCGTGGTCTG
TCCAAGTTCTTCACGTTTCTAACATTCGGTAATTTTTTCCCAGTGACAGT
TTTTCGGTAGCAGTTATTCGGTAGAGGGTAAGCATATTCAATAAGCTTTC
CAATATGTCTCTCATCGCCTCCAGAAATGCCTATAAGTTTAAAATCTCTC
TTATTGGAGTTTTTGTGAAAACATCTGATGATGTTGAAGCGGACAAACTC
GAACAGGGGATTCGAGTTTCAATCATAAAAATGATGAAGTACACGAGAAG
TGAAGGCGATGAAGGGAGAATCAGTAGGATATGGAAATGATTATTTTGGA
TTGCTCCTGAAGGCTTATCACGATCCTGATATGACCAAGAGAATCTCTCT
TGATGTACTAATTGATGAGTGCAAGACATTCTATATTGCAGGACATGAAA
CAACCACAAAATTACTTACCTGGACAATTTTACTTCTAGCAACGCACACA
GATTGGCAAGAGAAATTAAGAGAGGAAGTGCTTGAATTATTTGGCCAGCA
AAATCCGACACCAGATGGCATAGGAAAATTGAAAACAATGAGCATGGTTA
TAAATGAATCTTTAAGGCTGTATCCGCCAGCTGTTAACATTTCGAGGAAT
GTTGAAAGGGAAGTGAGACTGGGGGAAGTACATTCTTCCAGNCAATATGG
AACTTGTTATTCCAATTCTGGCAATTCACCATGACCCTCAAATTTGGGGG
AGAAAGATGTTGATATTTTCAAGCCCGAGAGATTTTGCAGAAGGTGTGCT
AAAGCTAGCAACACACACCAGCAGCATTCTTTCTTTTTAGTCAGGGCCAA
GAATTTGTGTGGGGCTTGATTTTGCAGCTACAGAAGCAAAGATTGCGCTT
CTCATGATTCTGCAACGATACAGGGTCAATCTGTCCCCCAGTTATGTGCA
CTCCCCGGGTTTTTATTGGGAACCCTTCCCCCCTCACCTGGGACTTCCAG
TTATATTTCCCCCCCTTTAATGGCTCACCCAAAAAAACTAGCTAAAGAAA
CTTTTCTCCTTTTTATAACCCCTCCCCGGGGGTTTGCGGGAATCCCCACC
CCCCTTTTTTTTTATAAAAAAAAAAAAATTTTTTTTCGTTTTTTTTTTTT
TTTTTTTTTTAAAAACCCCCCCTCTCCCGTGGGGGGCACGTGGAGGAGAC
AAACAAAAACCCACCCTATTTTCTTTGTTCCCCCTCAACAA
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