DY258114

Overview
NameDY258114
Unique NameDY258114
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1198
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258114 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 7.210e-12
Identity = 56/220 (25.45%), Postives = 87/220 (39.55%), Query Frame = 1
Query:  430 SHPYKGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAG--NXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSL-NPVGVTDGMQDSFLASFLL---GWGSQLXAGLG--------FYPMIRWRKRMDDDLRRSCEVQEL 1047
            S  Y+GI     + V+DEG+ +LW+GN    + Y    A  F    +  ++ N   +    WK  +G  +               Y  D  RT  A  A+ AK    + +  L   +K   K++G  G +RG S S +    Y GL+F  Y  + + +          L S+ L   GW  +  AGL          +P+   RKR+    R     +EL
Sbjct:   48 SRYYRGIFQTMQQIVRDEGVTALWKGNIPAELLYVFYGATQFVTYHHVNQVINAYNETAEKWKISSGAQSFIAGATAGAGATIATYPFDLFRTLFA--AQGAKNCNVKNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVKDSLDAFSNKHHDLLVSYNLPTKGW-QEATAGLCAGTASKALVFPLDTIRKRLQTQGRMDVSYKEL 264          

HSP 2 Score: 25.0238 bits (53), Expect = 7.210e-12
Identity = 10/25 (40.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:  321 LMGGVSAAVSKTAAAPIERVKLLIQ 395
            L GG++  VS+   AP++ VK+ +Q
Sbjct:   18 LCGGIAGMVSRFCIAPLDVVKIRLQ 42          
BLAST of DY258114 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 7.216e-12
Identity = 41/161 (25.47%), Postives = 67/161 (41.61%), Query Frame = 1
Query:  442 KGISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNF-AFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLA------NDAKAAKKGGERQFNGLIDVYKKTLKSD-GIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGV 900
            +GI     +   +EG   L+RGN  N IR FP  A+ F  ++   K+LF+   +                          Y LD  +TRL+      +    +K     +  G+  +  +T + + G+ GLYRG   + +G + Y  L F +Y+ L   GV
Sbjct:   61 RGIFSSIRQVYHEEGTKGLFRGNGLNCIRIFPYSAVQFVVYEACKKKLFHVNGNNGQEQLTNTQRLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGV 221          

HSP 2 Score: 40.817 bits (94), Expect = 7.216e-12
Identity = 21/44 (47.73%), Postives = 28/44 (63.64%), Query Frame = 3
Query:  279 LHQKKSLSSFL-----VDFLMGGVSAAVSKTAAAPIERVKLLIQ 395
            L Q  S+  FL     + FL GGV+ AVS+T  +P ERVK+L+Q
Sbjct:    8 LEQPNSIKDFLKQDSNIAFLAGGVAGAVSRTVVSPFERVKILLQ 51          
BLAST of DY258114 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 9.269e-12
Identity = 47/183 (25.68%), Postives = 78/183 (42.62%), Query Frame = 1
Query:  472 VKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGVTDGMQDS----FLASFLLGWGSQLXAGLGFYPMIRWRKRM 1008
            V + GI SLWRGN  NV++  P  A+ F   +  KR    +++     + F                 +Y ++  +TRL       ++ G  Q+ GL+D  ++ L+ +G    YRG+  + +G I Y G+   +Y++L    +     DS     L     G  S     +  YP+   R RM
Sbjct:  233 VLEGGIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLHVQERFVAGSLAGATAQT----IIYPMEVLKTRLT-----LRRTG--QYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLKNWWLQQYSHDSADPGILVLLACGTISSTCGQIASYPLALVRTRM 404          

HSP 2 Score: 30.4166 bits (67), Expect = 9.269e-12
Identity = 13/37 (35.14%), Postives = 23/37 (62.16%), Query Frame = 3
Query:  285 QKKSLSSFLVDFLMGGVSAAVSKTAAAPIERVKLLIQ 395
            Q+K    +    + G V+ AVS+T  AP++R+K+ +Q
Sbjct:  178 QEKLTGMWWKQLVAGAVAGAVSRTGTAPLDRLKVFMQ 214          
BLAST of DY258114 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 55.4546 bits (132), Expect = 9.663e-11
Identity = 50/194 (25.77%), Postives = 78/194 (40.21%), Query Frame = 1
Query:  445 GISDCFGRTVKDEGILSLWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKK---DRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLIDVYKKTLKSDGIAGLYRGFSISCVGNIVYRGLYFGMYDSLNPVGV---TDGMQDSFLASFLLGWGSQLXAGLGFYPMIRWRKRM 1008
            G+  C      + GI S WRGN  NVI+  P  A+ F   D  KR     K   +     +  AG+              +Y ++  +TRL     A ++ G+    G+     K    +GI   Y+G+  + +G I Y G+   +Y+SL  +     T+  +   LA    G  S     L  YP+   R R+
Sbjct:  283 GVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKRWMQEYKGGAELSTIERLLAGSSAGAISQTA-----IYPMEVMKTRL-----ALRRTGQLD-KGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMYTKYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRL 465          

HSP 2 Score: 30.0314 bits (66), Expect = 9.663e-11
Identity = 11/23 (47.83%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  327 GGVSAAVSKTAAAPIERVKLLIQ 395
            GGV+ A+S+T  AP +R+K+ +Q
Sbjct:  251 GGVAGAMSRTCTAPFDRIKVYLQ 273          
The following BLAST results are available for this feature:
BLAST of DY258114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
TPC1_YARLI7.210e-1225.45Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
YP011_YEAST7.216e-1225.47Uncharacterized mitochondrial carrier YPR011C OS=S... [more]
SCMC3_HUMAN9.269e-1225.68Calcium-binding mitochondrial carrier protein SCaM... [more]
CMC3_CAEEL9.663e-1125.77Probable calcium-binding mitochondrial carrier F17... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAB3AC12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258114 ID=DY258114; Name=DY258114; organism=Citrus clementina; type=EST; length=1198bp
GACATTACGGTGGTCCTCCACACTAGGCGACCTCCTCAGGTCACCATCTT
CAGCTTGCAAACACGGCAGTTGGACCGTATCCATCCGTATTTTCAGAAAA
ATGCAAGGGCCAGTCATACTTCATCTTCTGGGGGTCCTCCCCCAATCTGT
ATGCCCACAACTACAGTGTGGGCAGAGTTCCTTCGTTAATAGAGGTTTCA
CAGAATTCTTTTTGGGCAGCAAGTCAGAGGAACTGGCCTGGCACTTGTGT
CTCCTGGTTTCTCCTATATTCGTACAAGCTCCATCAGAAAAAAAGTCTTT
CTTCTTTTTTGGTGGATTTTCTCATGGGAGGAGTTTCAGCAGCTGTTTCC
AAGACTGCAGCTGCTCCTATTGAGCGGGTTAAGCTTTTGATTCAGAAATC
AAGATGAGATGATCAAGAGTGGTCGGCTCTCGCATCCGTACAAGGGGATT
TCTGATTGCTTTGGTAGAACTGTTAAGGATGAAGGCATACTATCTCTTTG
GAGAGGCAACACTGCCAATGTTATCAGATACTTCCCTACCCAGGCCCTGA
ACTTTGCATTCAAGGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGAC
AGAGATGGCTACTGGAAGTGGTTTGCTGGGAACTTGGCATCTGGTGGGGC
TGCTGGTGCTTCATCGCTTCTTTTTGTGTATTCGCTTGACTATGCAAGAA
CACGTTTGGCAAATGATGCTAAGGCAGCTAAAAAGGGTGGGGAAAGGCAG
TTTAATGGTTTGATTGATGTCTACAAGAAGACTCTGAAATCTGATGGCAT
TGCTGGGCTCTACCGTGGATTCAGCATCTCATGTGTTGGAAATATAGTGT
ATCGTGGGCTCTACTTTGGAATGTACGATTCTCTAAACCCTGTGGGTGTG
ACTGATGGGATGCAGGATAGTTTCTTGGCTAGCTTCTTACTTGGCTGGGG
ATCACAATTGGNTGCTGGTTTGGGCTTCTACCCAATGATACGGTGGCGAA
AAAGGATGGATGATGACCTCCGGAGAAGCTGTGAAGTACAAGAACTCCTT
TTCATGCATTCCAGGAAATTAAAAAAAAATGGAAGGCCAAAACAACCCTT
CCAAAGGGGCCGGGGGGAAAAATTTTGCGGGGGTGGGGGGGGGGGGGGGG
GGGGGGGTTGGCCCGGGATAAAAAAAAAGCCACCCCGGGTTCATTTTG
back to top