DY258118

Overview
NameDY258118
Unique NameDY258118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:551..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.420e-32
Identity = 60/99 (60.61%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATD  + FK+AIWFWMTAQPPKPS H VI  +W PS  D  AGR+PG+G+ TNIINGGIECG G +  V +RIGF+  +C   G+  G NLDCY Q+PF
Sbjct:  167 ATDATVGFKTAIWFWMTAQPPKPSSHAVIAGQWSPSGADRAAGRVPGFGVITNIINGGIECGHGQDSRVADRIGFYKRYCDILGVGYGNNLDCYSQRPF 265          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.079e-32
Identity = 59/99 (59.60%), Postives = 76/99 (76.77%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            +T+P +SFK+AIWFWMT Q  KPS H+VIT  W PSA D +AGR+PGYG+ TNIINGGIECG G ++ V +R+GF+  +C  FG+ PG NLDC +Q+ F
Sbjct:  221 STNPTVSFKTAIWFWMTPQANKPSSHDVITGRWTPSAADSSAGRVPGYGVITNIINGGIECGHGQDNRVDDRVGFYKRYCQIFGVDPGGNLDCNNQRSF 319          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.079e-32
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            A D V+SFK+A+WFWMTAQ PKPS H+VIT  W PS  D   GR+PG+G+ TNIINGG+EC  G N  + NRIGF+  +C   G+ PG NLDC +Q+PFG
Sbjct:  147 ANDAVVSFKTALWFWMTAQQPKPSAHDVITGRWSPSVADSAPGRVPGFGVITNIINGGMECNSGSNALMDNRIGFYRRYCQILGVDPGNNLDCANQRPFG 246          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIB_VITVI (Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.245e-32
Identity = 60/100 (60.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ATD V+SFK+A WFWMT Q PKPSCH VIT  W PS  D +AGRLPG+G+ TNIINGG+ECG+G    V++RIGF+  +C    +  G NLDC +Q+PFG
Sbjct:  207 ATDAVISFKTAFWFWMTPQSPKPSCHNVITGGWTPSGADRSAGRLPGFGVITNIINGGVECGKGVVPQVQDRIGFYKRYCDILRVSYGNNLDCNNQRPFG 306          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.060e-31
Identity = 55/101 (54.46%), Postives = 81/101 (80.20%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWN-DAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFG 351
            ++DPV++F++AIWFWMTAQ PKPSCH+VIT++W PS +D ++GRLPGYG+ TNIINGG ECG+G++ D  ++R+G++  +C  F +  G N+ C  Q+P+G
Sbjct:  154 SSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDDRSSGRLPGYGMATNIINGGEECGKGYSTDNAKDRVGYYKRYCDMFRVGYGDNIACRDQKPYG 254          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.690e-31
Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP++SF++AIWFWMTAQ  KPSCH VI  +W PS  D  A R+PGYG+ TNIINGG+EC  G N AV +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  152 ATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPADTAANRVPGYGVITNIINGGLECNMGPNTAVESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.744e-30
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATD  +SFK+AIWFWMT Q  KPSCH+VIT  W PSA D +A R+PGYG+ TNIINGGIECG+G N  V +RIG++        + PG NLDCY+Q+ F
Sbjct:  153 ATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTSANRVPGYGVITNIINGGIECGKGQNARVEDRIGYYRRNVSIMNVAPGDNLDCYNQRNF 251          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.277e-30
Identity = 57/99 (57.58%), Postives = 69/99 (69.70%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATDP++SFK+AIWFWMT Q  KPSCH VI  +W PS  D  A R+PGYG+ TNIING  ECG G N A  +RIGF+  +CG   +  G NLDC +Q+ F
Sbjct:  152 ATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDCNNQKNF 250          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.884e-30
Identity = 59/99 (59.60%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ATD  +SFK+AIWFWMT Q  KPS H+VI   W PSA D +A R PG G+ TNIINGGIECG G N AV +RIG++  +CG   + PG NLDCY+Q+ F
Sbjct:  152 ATDATISFKTAIWFWMTPQDNKPSSHDVIIGSWTPSAADQSANRAPGCGVITNIINGGIECGVGPNAAVEDRIGYYRRYCGMLNVAPGDNLDCYNQRNF 250          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.632e-28
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCG 294
            ATDPV+SFKSAIWFWMT Q PKPSCH+VI   W+PSA D  A RLPG+G+ TNIINGG+ECG+G +  V++RIGF+  +CG
Sbjct:  221 ATDPVISFKSAIWFWMTPQSPKPSCHDVIIGRWQPSAADRAANRLPGFGVITNIINGGLECGRGSDSRVQDRIGFYRRYCG 301          
The following BLAST results are available for this feature:
BLAST of DY258118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI2_HORVU5.420e-3260.6126 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIX_PEA7.079e-3259.60Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHID_SOLLC7.079e-3259.00Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHIB_VITVI9.245e-3260.00Basic endochitinase OS=Vitis vinifera GN=CHIT1B PE... [more]
CHI11_ORYSJ2.060e-3154.46Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI2.690e-3158.59Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIT_PETHY1.744e-3059.60Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIA_SOLLC2.277e-3057.58Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHIP_TOBAC3.884e-3059.60Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI4_SOLTU1.632e-2866.67Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AD08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258118 ID=DY258118; Name=DY258118; organism=Citrus clementina; type=EST; length=553bp
GGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATG
ACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGG
CCTTATTCTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAA
GACTGATCCAACATGGATCAATGAGTCTTCTCCAAAAAAAAAAAAAAAAA
AAA
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