DY258118

Overview
NameDY258118
Unique NameDY258118
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length553
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9507 contig Ccv1_Contig9507:551..1103. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.804e-26
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   67 LSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            ++F++A+WFWMT +  KPSCH+V+  E++P   DV A R  G+GL TNI+NGG+EC +  +  V NRIGF+  +C   G+  G NLDC HQQPF
Sbjct:  197 IAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADVAANRTAGFGLVTNIVNGGLECNRAGDARVNNRIGFYRRYCQVLGVDVGPNLDCEHQQPF 290          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.689e-25
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 1
Query:   55 TDPVLSFKSAIWFWMTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF 348
            +D  + FK+A+WFWMT Q PKPS H+VIT  W PS+ D  AGR+PGYG+ TNII+GG+ECG+G    V +RIG++             NLDCY+Q+PF
Sbjct:  113 SDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD-----------NLDCYNQKPF 199          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.867e-24
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 372
            ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  232 ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGDIMSAS 337          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.439e-24
Identity = 52/108 (48.15%), Postives = 72/108 (66.67%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPFGLILMARS 372
            ATDP ++FK+A+W WMTA+ P +PS H V+T +W P+  D  AGR PGYGLTTNI+ GG++C  G   A  +R+ F+  +C   G+  G NLDC+ Q PF   +M+ S
Sbjct:  232 ATDPTVAFKTALWLWMTARSPSQPSPHAVVTGQWTPTPADSAAGRAPGYGLTTNILTGGLQCAGGNGGA--DRVAFYKRYCDVLGVGYGPNLDCFGQAPFDGGIMSAS 337          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.160e-24
Identity = 54/112 (48.21%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   52 ATDPVLSFKSAIWFWMTAQPP-KPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIECGQGWNDAVRNRIGFFSTFCGKFGIQPGYNLDCYHQQPF---GLILMARSM 375
            ATDPVLSF++A+WFWM       PSCHEVIT EW PS  D+ AGR PG+G+ TNII  G EC +      +NRI ++  +C    + PG NL C +Q+ F   GL+ M  +M
Sbjct:  205 ATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYCDNQETFEDNGLLKMVGTM 316          
BLAST of DY258118 vs. ExPASy Swiss-Prot
Match: CHI4_ARAHY (Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 30/46 (65.22%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   97 MTAQPPKPSCHEVITDEWKPSANDVNAGRLPGYGLTTNIINGGIEC 234
            MT Q  KPSCH+VIT+ W+P+A D  AGR PGYG+ TNIINGG++C
Sbjct:    1 MTPQGNKPSCHDVITNAWRPTATDSAAGRAPGYGVITNIINGGLDC 46          
The following BLAST results are available for this feature:
BLAST of DY258118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
CHI10_ORYSJ5.804e-2651.06Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_AVESA1.689e-2552.04Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHI7_ORYSJ1.867e-2448.15Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI2.439e-2448.15Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHI8_POPTR4.160e-2448.21Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI4_ARAHY2.141e-1265.22Endochitinase 4 (Fragment) OS=Arachis hypogaea PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AD08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258118 ID=DY258118; Name=DY258118; organism=Citrus clementina; type=EST; length=553bp
GGAGAAGACCTAGGGCTAGGAGAGGAGTTGTTGAACAATCCAGACCTTCT
TGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTGGTTCTGGATGA
CCGCACAGCCACCAAAGCCATCATGCCACGAAGTCATTACCGACGAATGG
AAACCATCAGCAAATGACGTAAACGCCGGCCGGCTTCCGGGATACGGTCT
AACCACAAATATAATCAACGGTGGAATTGAATGTGGCCAAGGTTGGAATG
ACGCTGTACGTAACCGTATTGGGTTCTTTAGCACTTTCTGTGGCAAGTTT
GGGATTCAGCCTGGTTACAATCTTGATTGCTACCACCAACAGCCTTTTGG
CCTTATTCTGATGGCACGATCTATGTGATCATCATGATCAACGTTTTAGT
AAAATAAGCTTAATAAAAGCTACTTAATAAAAACTTTAGATGTCACACTT
GTAGGTGGACAACTAAGTTGTTACGCTCTTATTGTAAATAAATTAAATAA
GACTGATCCAACATGGATCAATGAGTCTTCTCCAAAAAAAAAAAAAAAAA
AAA
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