DY258125

Overview
NameDY258125
Unique NameDY258125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1354
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9968 contig Ccv1_Contig9968:4..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: CFT2_SCHPO (Cleavage factor two protein 2 OS=Schizosaccharomyces pombe GN=cft2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 6.545e-18
Identity = 70/277 (25.27%), Postives = 128/277 (46.21%), Query Frame = 3
Query:    3 VFMTHATKAIYKLLLTDYVLVSKVSVEDMLFDEQDINRSMDRIEVLDFHQTV----EVNGIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRHLRAAELPQFS--------PDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFA-NSNPFKFKHISPLNSIDDLSDV--GPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVI 788
            ++ T  T  + ++ + D +  + +S  DM   + D++   D I  L + Q      + +G+    Y AGH LG  ++ +      VLY  D++  +D+HL  A L            P+  I ++   +     R  R+  F + + S++ +GG VL+P  A  R  EL  ILD +WS        PI + SP + K +   ++ I  M + I   F  N N  +F++I+ +     +S +  GP V++A+   L+ G S+++     S+  N  ++
Sbjct:   74 IYATLPTINMGRMTMLDAIKSNYIS--DM--SKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVLYAVDWNHSKDKHLNGAALYSNGHILEALNRPNTLITDANNSLVSIPSRKKRDEAFIESVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQPPLPFPILFLSPTSTKTIDYAKSMIEWMGDNIVRDFGINENLLEFRNINTITDFSQISHIGPGPKVILATALTLECGFSQRILLDLMSENSNDLIL 346          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: Y514_SYNY3 (Uncharacterized protein sll0514 OS=Synechocystis sp. (strain PCC 6803) GN=sll0514 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.844e-12
Identity = 74/283 (26.15%), Postives = 124/283 (43.82%), Query Frame = 3
Query:  192 AGHVLGAAMFMVDIAG----VRVLYTGDYSREEDRHLRAAE------LPQFSPDICIIESTYGVQLHQPRNIRERRFTDVIHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEF--HNIPIYYASPLAKKCMAVYQTYILSMNERIRNQFANSNPF-----KFKHISPL-NSIDDLSDVGPSVVMASPGGLQSGLSRQLFDIWCSDKKNACVIPGYLVEGTLAKTIISEPKEVTLMNGLTAPLNMQGHYISFSAHADYAQTSTFLKELMAPNIILVHGE 986
            AGH+ GAA+ +++        RV+YTGDY      HL+  +      L    PD+ I+E  YG +    R  +E++F   I + +++G  +L+P   LG AQE+L +L      H +F    + ++    +A+ C A YQ  I  + + +RN FA   P       + H+ PL +   +LS   PS+V+ +           L  +W         +P  LV    A   + E  +  L + L A             H+D   T+  +  L   +++ VHG+
Sbjct:  133 AGHLPGAALILLEYHNGDRLYRVIYTGDYCLS---HLQLVDGLALTPLRGLKPDVLILEGHYGNRRLPHRRQQEKQFIQAIETVLAKGRNILLPVPPLGLAQEILKLL----RTHHQFTGRQVNLWAGESVARGCDA-YQGIIDHLPDNVRN-FAQHQPLFWDDKVYPHLRPLTDDQGELSLSAPSIVITTTWPAFWPSPAALPGLWTVFMPQLLTLPSCLV--NFAWQDLEEFPKYELEDYLLAD------------HSDGRNTTQLIHNLRPQHLVFVHGQ 392          
BLAST of DY258125 vs. ExPASy Swiss-Prot
Match: INT9_DICDI (Integrator complex subunit 9 homolog OS=Dictyostelium discoideum GN=ints9 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.749e-11
Identity = 52/188 (27.66%), Postives = 98/188 (52.13%), Query Frame = 3
Query:   90 LFDEQDINRSMDRIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVDIAGV-RVLYTGDYSREEDRHLRAAEL-PQFSPDICIIESTYGVQLHQPRNIRERRFTDV---IHSTISQGGRVLIPAYALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILSMNE-RIRNQFANSNPF 635
            L+ + DI +S ++I+ + F+++++  G +    ++G+ LG+A ++++  G  RV+Y  D S    R+    +L P  +PD+ I+        H P N  ++  +++   I ST+ QGG VLIP+Y+ G   +L   L +Y  N      +PIY+ S ++K  ++    Y   +N+ +    F    PF
Sbjct:  217 LYKKIDIEKSFEKIQSIRFNESIKHYGFECIPSSSGYGLGSANWVIESKGFERVVYISDSSLSLSRYPTPFQLSPIDNPDVLILSKIN----HYPNNPPDQMLSELCSNIGSTLQQGGTVLIPSYSCGIILDLFEHLADY-LNKVGLPYVPIYFVSSVSKAVLSYADIYSEWLNKSKQERAFMPETPF 399          
The following BLAST results are available for this feature:
BLAST of DY258125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CFT2_SCHPO6.545e-1825.27Cleavage factor two protein 2 OS=Schizosaccharomyc... [more]
Y514_SYNY31.844e-1226.15Uncharacterized protein sll0514 OS=Synechocystis s... [more]
INT9_DICDI7.749e-1127.66Integrator complex subunit 9 homolog OS=Dictyostel... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3AF08ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258125 ID=DY258125; Name=DY258125; organism=Citrus clementina; type=EST; length=1354bp
GGGTATTTATGACTCATGCTACAAAGGCTATTTACAAGTTGCTTTTGACT
GATTATGTATTAGTGAGCAAAGTTTCAGTTGAAGATATGTTGTTCGATGA
ACAAGACATTAATCGCTCCATGGATAGAATTGAGGTTCTTGATTTCCATC
AGACAGTGGAAGTGAATGGCATTAAATTCTGGTGTTATACCGCTGGCCAT
GTCCTGGGTGCTGCCATGTTTATGGTTGACATTGCTGGTGTTCGAGTACT
CTACACTGGAGATTATTCTCGTGAAGAAGACCGACATCTCCGTGCTGCTG
AGCTTCCTCAGTTCTCTCCTGACATTTGTATAATCGAATCCACTTATGGT
GTTCAGCTTCATCAACCACGGAACATTCGTGAGAGGCGCTTCACTGATGT
TATTCACTCAACTATTTCTCAAGGAGGTCGTGTTCTAATTCCGGCATATG
CCCTTGGCCGAGCCCAGGAGCTGCTGCTGATCCTTGATGAGTACTGGTCG
AACCATCCGGAGTTCCATAATATTCCAATTTATTATGCTTCTCCACTTGC
CAAAAAGTGCATGGCTGTTTATCAGACATACATCCTTTCCATGAATGAGA
GAATCCGCAACCAGTTTGCAAACTCAAATCCCTTCAAATTCAAGCACATT
TCGCCATTAAATAGCATTGATGACTTAAGTGATGTTGGCCCTTCAGTGGT
GATGGCAAGCCCGGGTGGGCTACAGAGTGGTTTGTCTAGACAATTATTTG
ATATTTGGTGCTCTGATAAGAAAAATGCTTGTGTCATACCAGGTTATCTT
GTTGAAGGAACATTGGCAAAAACCATAATTAGTGAACCAAAAGAAGTCAC
CCTTATGAATGGGCTCACCGCTCCTCTCAACATGCAGGGTCATTACATAT
CTTTCTCTGCACACGCAGACTATGCTCAGACAAGCACATTTTTAAAAGAG
CTCATGGCTCCTAACATAATTCTTGTTCATGGAGAATCTCATGAAAAGGG
GGAGGCTCAAAAACAAGCATATGACCCAATTACCTGACTGCAATCCAAAA
TTATAACCCCCAAGAACTGTCCGTCCCGTTGAAAGGGATTTAACTCCCAA
AAAAATGGAAAAAACCATTGGGAAGGGTGGGTGAAAAAAAGGCCCGAAAT
TTGGGGAAAAATGTCCCTGGGGCAATTTTTTTTAAAACAGGGGTTTCACT
TTTCCCAAAAAAAGGGGGCTCCCGGAGATAATTTTTCCACACCCTTTCCC
CCCCCCTTTTTATCAACACAAAAAAAAATATATCCCCAAAAAGAAATAAT
TACTACTCTCCCCCGCGCCTCCCACGGGCGCGGCCCCCCTTCTGGGTGTT
GGGG
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